| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0533 |
|---|
| Symbol | |
|---|
| ID | 4909900 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 507981 |
|---|
| End bp | 508811 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640124279 |
|---|
| Product | Sec-independent protein translocase TatC |
|---|
| Protein accession | YP_001055426 |
|---|
| Protein GI | 126459148 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0805] Sec-independent protein secretion pathway component TatC |
|---|
| TIGRFAM ID | [TIGR00945] Twin arginine targeting (Tat) protein translocase TatC
[TIGR01912] Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCTTT GGGAGCACCT GAGGGAGCTC GGCCAGCGGC TTAAGAGGGT GTTGATCGCC
TTCGTCGTCG TGTTTATAGT CATGTGGATG CCCGCGCCGG ATCTGCATGG CGGCAGTATA
ATGTCAATCT TGGCCTCCTT CTTCGTCACT GGCGAGTACA GGCCGCTGGC TTACTGGGCC
TTCTTTGAAA CAATAAGGCC GATGCTCGAC GACTTGAACA AGACCGCCAA CATAAAGATA
GCGCTAATTG CCGGAGAGGT GTGGAATCCC CTTGGCGCAG TTATGTACGC CTCATTGTAC
CTAGCCGCGT TGGTAGTGTT CCCGCTGTTA GTGTATGAGA TGTGGCTGTA TGTACAGCCA
GCGCTTTACC CCCACGAGGA GAGGGCCGTG AAGAAGTACC TATGGGTAGC TCTCCTCCTA
TTTTACGCTG GCAACCTCTT CGGCATATTC GTAATATTCC CAGCCCTCTT TAGATTTATC
GCAGGCTTTG CGGCAATATT ACGCATAGAG CAAATCTTCA GCGTATCCTC TGTGGTCAGC
ACCTGGATGC AGTTGGCCTT TTGGACAGGC GTAATCTTTG AAACCCCAAT CGTCATAGCC
ATACTTTCAG AGATCTGTCT CCTCAATCCG TGGACCCTCG CCGCGTATAG GCCCGTGGTC
TACGCAGTGG CGCTTATACT AATAGCAATC GTCACGCCGG ACACAACCCT CGTCTCCACA
TTCCTCACCT TTATACCATT CGCCATACTC TTCGAGGTTG GCCTCGTGTG GAGCAGGCGG
ATAGTCAAAA AGTGCCCCGA TATTCAGCCC TTGAGCAAGC CGTATAGGTA A
|
|---|
| Protein sequence | MPLWEHLREL GQRLKRVLIA FVVVFIVMWM PAPDLHGGSI MSILASFFVT GEYRPLAYWA
FFETIRPMLD DLNKTANIKI ALIAGEVWNP LGAVMYASLY LAALVVFPLL VYEMWLYVQP
ALYPHEERAV KKYLWVALLL FYAGNLFGIF VIFPALFRFI AGFAAILRIE QIFSVSSVVS
TWMQLAFWTG VIFETPIVIA ILSEICLLNP WTLAAYRPVV YAVALILIAI VTPDTTLVST
FLTFIPFAIL FEVGLVWSRR IVKKCPDIQP LSKPYR
|
|---|
| |