| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0496 |
|---|
| Symbol | |
|---|
| ID | 4908120 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 475103 |
|---|
| End bp | 476002 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640124243 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001055390 |
|---|
| Protein GI | 126459112 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1814] Uncharacterized membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATCAG GTTCTAGTTC GAACTTAGTT CTCGTAGCTA GAGAGGCCGC GGTGGACGAG
TATAAGGAGT ATTTGACCTA CAGCACCTTG GCCAAGATTG AGCGGAATCC GGCGAGGAGG
GCTGTGCTTA TGCGTCTGGC GGAGCAGGAG TTTAGGCATT TCCAGTTCTG GAGCAGGCTG
GCCCCCGTCG AGCCCCGGGG CTGGTTGCTG AGGCTCTACG CGTGGCTTAT GGCGCTGCTC
CGCCTTATAC TCGGCGTAAC TTTTGTGGCT AAGTTTATGG AGCGGGGGGA GGAGAAGGCT
ATTGAGAGGT ATAGGTCGGT TGAGCCCCTC CTCTCTGGGA GAGACTTGGA GGAGCTTAGG
CAGATAATTA GGGATGAGGA GGAGCACGAG AGGGCGCTTA TTTCTCAGCT TGACGAGACT
ATTGTCAAAT ATATGGGGGC GCTCGTCTTG GGCCTGGCTG ACGCGATTAT TGAAATCACC
GGTGCCCACG CTGGAACTCT CGGCGCCACT GACAGCACCA TCACGGCGGG CGTTATTGGC
CTAATTGTGG GCATCGGCGC GTCTATCTCC ATGGCCTCTG CCTCATTTCT GCAGACAAAG
CACGAGGTGG GGAAGTCGCC CACTGTGGCG GCCCTTGTGA CGGGTGTGGG ATACATCGCG
GCGGTTGCCC TTATGTCCCT GCCATACTTC CTCACACACG ACATCTACGT GGCCTTTGCC
GCGTCTATCG CCGTGGGCAT CTTCCTCACG TTTGTCTTAA CGCTACAAGC CTCGGTCTAC
GCCGATAGGG ACTTCAAGTT TGAGTTTTTG CAAACCGTGG GGCTTCTCTT GGGCACTGCA
CTGTTGACAT ACTTCGCGGG GACGTACCTC GGCGAGTTGT TTGGAATAAG GACTATCTGA
|
|---|
| Protein sequence | MESGSSSNLV LVAREAAVDE YKEYLTYSTL AKIERNPARR AVLMRLAEQE FRHFQFWSRL
APVEPRGWLL RLYAWLMALL RLILGVTFVA KFMERGEEKA IERYRSVEPL LSGRDLEELR
QIIRDEEEHE RALISQLDET IVKYMGALVL GLADAIIEIT GAHAGTLGAT DSTITAGVIG
LIVGIGASIS MASASFLQTK HEVGKSPTVA ALVTGVGYIA AVALMSLPYF LTHDIYVAFA
ASIAVGIFLT FVLTLQASVY ADRDFKFEFL QTVGLLLGTA LLTYFAGTYL GELFGIRTI
|
|---|
| |