| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0390 |
|---|
| Symbol | |
|---|
| ID | 4909911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 374003 |
|---|
| End bp | 374488 |
|---|
| Gene Length | 486 bp |
|---|
| Protein Length | 161 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640124142 |
|---|
| Product | PaREP1 domain-containing protein |
|---|
| Protein accession | YP_001055291 |
|---|
| Protein GI | 126459013 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0971317 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAGACGT TGCCAAAGCC GTGGTTCGAC TTGGCCAAGT ACAGGGAGGT TAGGCTCAAG
GAGGCCCTAT ACGAGGCGGA ACTCGCGGAG CGTTTCTTGG AGGAGGGCTT TGTGAGAAAC
GCCGCTGGGA AGGCCTTTCA AGCTTGGAAG ACCCTCGTGG CGGCCTACGC CGTCGACAAA
GTTGAAGAGT TGAAGAATGC CTTCCCCGGG CGTAAGAAGC CTAGGGGGAT GCGGGGCAGA
GCTGAGAGTG CCCTCTGGGT GTTGGCCATA ATGCCCACCA CTGCCCTGAA GCAGGTGGCG
CAGATCGTAG GCGGCGACGT GGACATCTAC ACAGACAAGG CGCTGTGGAT CCACGAGTAC
CAGTACGACG GCCCCGATCC CCAAGCCATC CTCAGCCCAT ACCCAGACGA CGAGGTTGCG
GTGAGGGACA TAAAGAGGCT TGTGGAAAAG GTGAGAGAAC TGGCGGAGAG GCAATTACGG
CGTTAG
|
|---|
| Protein sequence | METLPKPWFD LAKYREVRLK EALYEAELAE RFLEEGFVRN AAGKAFQAWK TLVAAYAVDK
VEELKNAFPG RKKPRGMRGR AESALWVLAI MPTTALKQVA QIVGGDVDIY TDKALWIHEY
QYDGPDPQAI LSPYPDDEVA VRDIKRLVEK VRELAERQLR R
|
|---|
| |