| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0365 |
|---|
| Symbol | |
|---|
| ID | 4908669 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 352174 |
|---|
| End bp | 352905 |
|---|
| Gene Length | 732 bp |
|---|
| Protein Length | 243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640124117 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001055266 |
|---|
| Protein GI | 126458988 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAAAGG AGGTAGCCCT GGCGGGGCTC GCGGCCGTCG TTTTTCTCTT CTACCTCCCC
TTCCTAGCCC TCGGCTACTA CGCAGTGGGC GGGGGCGAGC TCAAGACGCC TCCCCTCTCC
ATGTTGACTA CCACGTTTCT CCTAGCCGCT GCGACCGCCG TGGTGTCCAT AGCCCTTGCC
TACCCCGCCG CCTACTACCT CGCCAAGAGG GGCACAGAGC TGGAGTTCGC CCTGTTGGTG
GCCCCCCTGT GGATTGGAAC GCTTCTCAAG GCCTATTCGC TCCTCACGCT CTTCGCCATA
GTGGAAAAAT TCACTGGGCT AAGGCTCTGG GGGTCGCCGC TGGGAGTGCT CGTGGGCATG
GTGTACGAGT ACCTCCCCTA CTCCCTCTTG ACCATTTACG CCGCTGTGGA GAAGCTCAGC
GAGACTCCCG TAAACGCGGC CCGGGTGCTG GGCGCCTCTA GGCTTCAAGC ATTTCTAAGA
GTGGAGCTAC CGCTCACTAT GCCAGGCGTA GTGGCGGCCT TTGTGTTAGT CTTCCTCCTA
GCCCTAGGCG AAGTAATTAT GCCAGCCGTT CTGGGCGCTG GGAAGGTATA CACCTTTGGG
AGCTACATCT GGGACCTCTA CTTCAAGTCC AGAGACTTTT ACAACGGCAG CATTCTCTCC
CTGGCCCTCT CGGGGCTCTC CCTCTTGGCC ACCTACGTAG TTGTAAAAGC CATTAGGCCC
TTCTCCATAT GA
|
|---|
| Protein sequence | MIKEVALAGL AAVVFLFYLP FLALGYYAVG GGELKTPPLS MLTTTFLLAA ATAVVSIALA
YPAAYYLAKR GTELEFALLV APLWIGTLLK AYSLLTLFAI VEKFTGLRLW GSPLGVLVGM
VYEYLPYSLL TIYAAVEKLS ETPVNAARVL GASRLQAFLR VELPLTMPGV VAAFVLVFLL
ALGEVIMPAV LGAGKVYTFG SYIWDLYFKS RDFYNGSILS LALSGLSLLA TYVVVKAIRP
FSI
|
|---|
| |