| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0273 |
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| Symbol | |
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| ID | 4908767 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 270269 |
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| End bp | 271171 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640124025 |
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| Product | CRISPR-associated RAMP Cmr4 family protein family protein |
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| Protein accession | YP_001055176 |
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| Protein GI | 126458898 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1336] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) |
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| TIGRFAM ID | [TIGR02580] CRISPR-associated RAMP protein, Cmr4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACAGAG TTAGCAGGGG GCTCCTCATA TACGCCGTCA CGCCGCTGCA CGTGGGCGTG
GGGAGGGCCG AGGGGGCCCA CGTCGACCTC CCAGTGCAGC GAGACGAGTT CGGCCTGCCC
ACCATATGGG CGTCGTCGCT TAAGGGCAGC TTGAAGAGCC ACGCGAGGAG CCGCTCGCCC
AACGACGCCA AGCTCGTCTT CGGCCCCGAC CCAGACGGGG GGCCTCCCGA CCACGCCTCC
GGCGCCGCCC TGTTAGACGC CAGGCTTTTG GCCATCCCGG CCCGCTCCGT GAGGGGGGTA
TGGGCCTACG TGACCTCTCC CCACATGTTG CGGACCTTTG TAACCTACGC CGAGGCCCTC
GGCGCGTTTC AGCCCCTTGC CGAAAAGGCC TGCGCCCTGC TTCAAGCTAC TGCGGGCTTG
AGCGAGGGGA GGGCCGCGGT GTCGGACCAC GCGCTCCTCC ACGGGGGACG GCTCTTTCTG
AACGAGGTGG AGCTCCAGGC GGAGGTGAAG AGGGAGGTGG GGGACTTCAT AGAGGAGTTA
GACAAGGCGC TGGGGGGAGA TCTCCCGAAG AAGGCCCTGG CCGTGGTCAG CGACGACGTT
GCTAAAGAGG TGGTGAACAG GTCCACGCTT GTCCAATACA GAGTGAGGCT GGACAGCGCT
AGGAAGACAG TGGTAGAAGG CGCGCTGTGG AGCGAGGAGT ACGTGCCCCA GTTCACCGTC
TTCGCCTCAG GGGTGGTTTG TAGGCCCGTG GCGCTCAAAG ACGCGACGAT AAAGGCGGAG
GAGATATGTG AAAAGTTTAC AAAGCTGTTG ACGAATGGGC AGGGGAACAA GGCCAACGTG
TGGGTCGGGG GTAAGGAGAC GATTGGGAAA GGGCTCATCT CGGTGTACAT ATGGACGAGG
TAG
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| Protein sequence | MDRVSRGLLI YAVTPLHVGV GRAEGAHVDL PVQRDEFGLP TIWASSLKGS LKSHARSRSP
NDAKLVFGPD PDGGPPDHAS GAALLDARLL AIPARSVRGV WAYVTSPHML RTFVTYAEAL
GAFQPLAEKA CALLQATAGL SEGRAAVSDH ALLHGGRLFL NEVELQAEVK REVGDFIEEL
DKALGGDLPK KALAVVSDDV AKEVVNRSTL VQYRVRLDSA RKTVVEGALW SEEYVPQFTV
FASGVVCRPV ALKDATIKAE EICEKFTKLL TNGQGNKANV WVGGKETIGK GLISVYIWTR
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