| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0249 |
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| Symbol | |
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| ID | 4909808 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 248192 |
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| End bp | 249535 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640124001 |
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| Product | hypothetical protein |
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| Protein accession | YP_001055152 |
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| Protein GI | 126458874 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG1842] Phage shock protein A (IM30), suppresses sigma54-dependent transcription |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.463551 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGGTAT ACATGCGGTT GGGAATAGCA ATATTCCTGG TGGCGGCGCT CGTAGCCGCC
CAGCAAATCT ATGTCCCAAT TCTGGCCGAC GTGGCCCATG GAGAGGCCAC CAAGGGGCTC
GACAGGTGGG TCAACAGCAC GGCCAATCCC GACGCCATAT CAGATTTCGC AAAGCTCTAC
GTCCTCGTGT CGCCCGGCCT CTCCGACCCA ACGCTAGACC GGTTGAACAA GACGAAGATT
GCCACGTTCA TTGTGGGGGA CTTGTCCACA GTTGACCTCT CCCAGTTCAA GGTGATAATA
CTCGGCCAGC CTCAAAAGCC GTTGACAGAC GCCGAGCTCG CGGCTTTGAA GAAGTGGTTT
GACGAAGGCG GAAAAGTGCT GTGGTGCGCC GCAGACAGCG ACTATCCGGC GCAAGGCTCC
GAAATGGCGC AAGAAGTGTG CAACGACGTG GCTGAGTACT TGGGTGCCCA CATTAGATTG
GACTACGTCT CAGTAGAAGA TTCGAAGCAC AACGCCGGCG CTGGGTATAG AGTGGTAGGT
GTGATAGACC CGCCGCCGAA CTTGGCGTTC CTCGGCTTCA TGGCCCAGCG TGTCCTCTTC
CACGGGCCGG GCGTAATAGC CGTGGTGCTC CCCAACGGCA CCTGGGTCCC AGCCACAAGC
CCAGTCGTGC CTAAGTACTA TAACAACATA GCAGTAATTG CCAGAACTAC TGAAAACGGC
GTGATCGTTG AATCTAGGAC ATCCGCCGAT GGCAAGGGGA GAGACGGCAA GGCCCACAAG
GCCGGCGACA GGGGAGTCTT CGCCCTAATG GCTGTTGAGT TTATGCCAAG TGGAAGCGTC
TTGATCCTGT CCGGCGAAAC TCCCTACGGA GGCTATGAGC CAGGCGTGGC GCCCGTCTAC
TACGGCGTGC CGTTGGACGG GCCGAGATTC TTCAGAAACC TAATGCTCTG GGCCACCGGC
AACTACAGAG AGCTCTCCAC CTTCATAGCA CAGACGCAGG CCACAGCCGC CATGTCCAAC
CAGCTGGCCA CCCTCGCCGC TACCACTGGC AACTTGGCCA ACGACGTAGC CGCGCTGAAG
TCGACTGCAA ACCAGCTCAA CTCGCAGGTG GGACAGTTGT CGGGGCAGGT GGGCCAAGTC
AGCTCACAGG TAAGCGCCCT CTCGTCGCAG ATAAGCCAGC TCAACCAGAA GATTGACCAG
CTCACTCAGC AGCTCAACGC CGCCGTGGCC GAGGCCAACA ACGCCAAGAC CGTGGCCTTC
ATAGGCACAG CGCTGGCGCT GATATTCGCA ATAATCGCCG CAGTCCTCGC AGTACGCAGA
GGCGGAGGGA GAGAGACGCG ATGA
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| Protein sequence | MLVYMRLGIA IFLVAALVAA QQIYVPILAD VAHGEATKGL DRWVNSTANP DAISDFAKLY
VLVSPGLSDP TLDRLNKTKI ATFIVGDLST VDLSQFKVII LGQPQKPLTD AELAALKKWF
DEGGKVLWCA ADSDYPAQGS EMAQEVCNDV AEYLGAHIRL DYVSVEDSKH NAGAGYRVVG
VIDPPPNLAF LGFMAQRVLF HGPGVIAVVL PNGTWVPATS PVVPKYYNNI AVIARTTENG
VIVESRTSAD GKGRDGKAHK AGDRGVFALM AVEFMPSGSV LILSGETPYG GYEPGVAPVY
YGVPLDGPRF FRNLMLWATG NYRELSTFIA QTQATAAMSN QLATLAATTG NLANDVAALK
STANQLNSQV GQLSGQVGQV SSQVSALSSQ ISQLNQKIDQ LTQQLNAAVA EANNAKTVAF
IGTALALIFA IIAAVLAVRR GGGRETR
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