Gene Pcal_0238 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0238 
Symbol 
ID4909304 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand+ 
Start bp236144 
End bp236815 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content61% 
IMG OID640123990 
ProductABC transporter related 
Protein accessionYP_001055141 
Protein GI126458863 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.145385 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCGTGG AGATCGTAGT CAAAGACGTG GTTAAGTACT ACGGCGACTA CCCCGCGCTC 
AGGGGGGTTA CCCTCGAAGT TCCGCGCGGT GTGTGGCAGT GCCTCGTGGG GCCCTCTGGC 
AGCGGGAAGT CCACGCTCCT CCACATCATT GGAGGTGTGG ACAAGCCCAC CAAGGGGACT 
GTGGAAGTTG CGGGGGTGAG ACTCAACGAC CTCAACGACG ACCAGCTGGC CGAGTTCCGG 
AACAAGAACA TCGGCTTCGT CTTCCAAATG TTCTACCTAA TCCCCAGGAT GTCCATCCTC 
GAAAACGTGG AGCTCCCCCT AATCCTCCGC GGCGTCCCCA AGGCAAGGCG GAGGGAGGCG 
GCGCTTGAGG CGCTTAGGCT AGTCGGCCTC GGCCACATAG ACCCAAGGCG CAGGCCCACC 
CAGCTCTCCG GCGGCGAGCA GCAGCGCGTG GCAATAGCCA GGGCCATTGT GACGCGGCCC 
CGCATACTGC TCGCCGACGA GCCCACGGGC AACTTAGACT CGGCCACCAC CAAGGTCATA 
ATGGACATCT TCACACAGCT GAAGAAGGAG CTGGGCATCA CCATCGTCAT GGTGACCCAC 
AATCTAGAAC TCTTGTCCTA CTGCGACAGA TACGCGAGAA TGAGAGACGG GCGTATCGTG 
GAGCAGGGCT AG
 
Protein sequence
MRVEIVVKDV VKYYGDYPAL RGVTLEVPRG VWQCLVGPSG SGKSTLLHII GGVDKPTKGT 
VEVAGVRLND LNDDQLAEFR NKNIGFVFQM FYLIPRMSIL ENVELPLILR GVPKARRREA 
ALEALRLVGL GHIDPRRRPT QLSGGEQQRV AIARAIVTRP RILLADEPTG NLDSATTKVI 
MDIFTQLKKE LGITIVMVTH NLELLSYCDR YARMRDGRIV EQG