Gene Pcal_0236 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0236 
Symbol 
ID4908576 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp235078 
End bp235686 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content62% 
IMG OID640123988 
Productmethyltransferase 
Protein accessionYP_001055139 
Protein GI126458861 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2263] Predicted RNA methylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.140784 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTCAAA GCAGAAGGGA GCTTGAGATA TTCGTCGAGA GGTTGCCCAC CTTCAAGAGG 
CCTAAGTTGC GCCTAGAGCA GTATCCCACA GACGCGGCGA TTGTGGCGAC GGCCGTGTGG 
GACGCGTATA TGCGCGGCTT GTTGGACTCG GTCGTGGACC TTGGCTGTGG CACTGGCCGT 
TTTGCGCTTG CCGCCGCGGC GATGGGGGCC AGGAGGGTGC TCTGCGTAGA GGTCGACGTG 
GAGGCGCTGG AGGTGGCGAG GCAGGCGGCG GCCGGCCTTG GGCTAGACGT GGACTTCCTC 
GCCGCAGATG CCACGGCTCC GCCGCTGGCG AGGCGCTTCG ACGTGGCGTT TCAAAACCCG 
CCCTTCGGCA TCTGGAGCGG GCGGGGCACC GATGTGGCTT TTCTCCGTAG CGCAGTGGAG 
CTGGCCGACG TGGTGTACAC CATCCACAAG CTGGCCACCC TCGACTACAT AAGGGCCCAG 
GTGGAAAAGT GGGGCTTCCG CCTCGACGTC TTAGAAAAGG CCGTGCTCAA GATAAAGCCC 
ATGTATAAGC ACCACCGCAA GCGGATTCAC AACGTAGAAG TCTTCTTAGC AAGAGTGGCC 
AAGCCCTAA
 
Protein sequence
MFQSRRELEI FVERLPTFKR PKLRLEQYPT DAAIVATAVW DAYMRGLLDS VVDLGCGTGR 
FALAAAAMGA RRVLCVEVDV EALEVARQAA AGLGLDVDFL AADATAPPLA RRFDVAFQNP 
PFGIWSGRGT DVAFLRSAVE LADVVYTIHK LATLDYIRAQ VEKWGFRLDV LEKAVLKIKP 
MYKHHRKRIH NVEVFLARVA KP