Gene Pcal_0113 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0113 
Symbol 
ID4910269 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand+ 
Start bp111043 
End bp112071 
Gene Length1029 bp 
Protein Length342 aa 
Translation table11 
GC content61% 
IMG OID640123864 
Productcarbamoyl phosphate synthase small subunit 
Protein accessionYP_001055017 
Protein GI126458739 
COG category[E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism 
COG ID[COG0505] Carbamoylphosphate synthase small subunit 
TIGRFAM ID[TIGR01368] carbamoyl-phosphate synthase, small subunit 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.220432 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTTATAG GCAGGCACAT TGGGGCAGAG AGAGTCGCGG TAGGCGAGGT GGTTTTTACC 
ACCGCCGTGG TTGGATATCC ACAAGCATTG ACAGACCCCA GCTACAAGGG CCAGATATTG 
GCGTTCACCA TGCCCCTCAT CGGCAACTAC GGCGTGTCGG AGGACCAGAT GGAGTCGGAT 
GGGATAAAGG TGGAGGGCGT GGTGGTCTTC GAGGCCACGG AGCCCAGCCA CTACAAGTCC 
GCCATGTCTC TTGAGGAGTG GCTGGCCGCC TCCAACGTCC CCGGCCTTGC GCGGGTGGAC 
ACGCGGGCTT TGGCCCAGTT GCTCCGGGAG CACGGCGTCA TGATGGGCGC CATGGGCCCC 
GCCAAGCCGC ACGAGCTCGC CAAGGCGCTC CGCCGCTCTC CCAAGTACGA GGAGGCATCA 
TACGTGGACC TCGTCTCTGT GAAAGAGCCG GTGGAGCTGG GCGACGGCAA GCTCTGCATT 
GGGCTTGTGG ACTGCGGAGT GAAGAGGTCT ATTGTGAGAG AGCTGTTGAA GAGGGGGGTT 
AGGCTGAGGA TTGTGCCGTG CCGCCGCCCC GAGCTCGCCT ACGACTGCGA CGGCCTATTC 
GTCAGCAACG GCCCCGGCAA CCCCAAGCTG TTGACCTTCC TCGCCGAGGA GATTAGGCAG 
TATGTGGAGT ACAGGAAGCC TCTAATGGGC ATATGCCTGG GACACCAAGT GGTGGCCATG 
GCGATGGGTG CCGAGATTTA CAAGTTGAAG TTCGGCCACC GCGCCTCTAA TAAGCCTGTG 
CGGGACTTAG CCTTCACGGG GAAGACCTAC ATCACTACGC ACAACCATGG ATACGCCGTG 
GACCCACGGG GCACAGAGCT AAAGGTGTGG GCAATTCAGC CGGACGACGG GACTGTGGAA 
GGGCTCTACC ACGAGTCTCT GCCCATTTTA ACGACACAGT GGCACCCAGA GGCCTCGCCG 
GGGGCCAACG ACACTAAGTG GGTCTTCGAC AAGTTTGTAA AACTCGTCGA GCGCCATGCC 
GGACATTAG
 
Protein sequence
MFIGRHIGAE RVAVGEVVFT TAVVGYPQAL TDPSYKGQIL AFTMPLIGNY GVSEDQMESD 
GIKVEGVVVF EATEPSHYKS AMSLEEWLAA SNVPGLARVD TRALAQLLRE HGVMMGAMGP 
AKPHELAKAL RRSPKYEEAS YVDLVSVKEP VELGDGKLCI GLVDCGVKRS IVRELLKRGV 
RLRIVPCRRP ELAYDCDGLF VSNGPGNPKL LTFLAEEIRQ YVEYRKPLMG ICLGHQVVAM 
AMGAEIYKLK FGHRASNKPV RDLAFTGKTY ITTHNHGYAV DPRGTELKVW AIQPDDGTVE 
GLYHESLPIL TTQWHPEASP GANDTKWVFD KFVKLVERHA GH