Gene Patl_4294 details

Gene Information

• Locus tag: Patl_4294
• Symbol: atpC
• ID: 4176084
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: -
• Start bp: 5167459
• End bp: 5167872
• Gene Length: 414 bp
• Protein Length: 137 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 638057331
• Product: F0F1 ATP synthase subunit epsilon
• Protein accession: YP_663847
• Protein GI: 109900592
• COG category: [C] Energy production and conversion
• COG ID: [COG0355] F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)
• TIGRFAM ID: [TIGR01216] ATP synthase, F1 epsilon subunit (delta in mitochondria)

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.474087
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAATGA CAATTCAACT GGATGTGGTA AGCGCAGAAG ACAGTATTTT TTCTGGATTA 
GTGCAGAGCA TCCAAGTCAC CGGTAGTGAA GGTGAGCTTG GTGTTCAGTA TGGTCATGCT 
CCTTTGTTGA CTACCATCAA AGCTGGAATG GTTAATGTGG TTAAGCAGCA CGGCGAAGAA 
GAATTGATTT ATGTTGCTGG TGGTGTACTT GAAGTACAAC CCGGTCATAT ATCAGTACTT 
GCAGATACCG CACTTCGAGC TGGTGACCTG GATGAGCAAG CCGTTCTTGA GGCGAAGAAA 
CGTCTTGAAG AAAATATTGC AAATCCTAGT GCTGATTTCG AATATGCAGA AGCTGCTGCA 
GAGCTTGCCG AAACCATCGC GCAGTTACGA TTGATTCAAA AGCTACGCAA ATAA 

 

Protein sequence

MAMTIQLDVV SAEDSIFSGL VQSIQVTGSE GELGVQYGHA PLLTTIKAGM VNVVKQHGEE 
ELIYVAGGVL EVQPGHISVL ADTALRAGDL DEQAVLEAKK RLEENIANPS ADFEYAEAAA 
ELAETIAQLR LIQKLRK