| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4160 |
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| Symbol | |
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| ID | 4175949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 5003054 |
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| End bp | 5005510 |
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| Gene Length | 2457 bp |
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| Protein Length | 818 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638057196 |
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| Product | hypothetical protein |
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| Protein accession | YP_663713 |
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| Protein GI | 109900458 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins
[COG3023] Negative regulator of beta-lactamase expression |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000766166 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAC GTATTACGAG TTGGCAGCGA TCTGTCTTGA TATGCTTATT AACGGTAGCC
ATCGTCAGTT GTGCGACCCT ACCGATTAGT GAAATGCCCT CAAAAAACTT TAGCCATCGG
GTAAAGTTTC TAGTGATGCA TTTTACCGCT ATTGATTATC AAAAATCGGT TCACGCATTG
GTGGATGAAG GCGGATTGAG TGCTCATTAT CTTATCCCTG AATCTAATGA TCCCAGTTAT
CCTAAAGACT CGTTAGAAAT TCTCAAATTA GTAGATGAAG ACAAACGTGC TTGGCATGCT
GGTAACAGCG TGTGGCAAGG GCGCAGCGAA TTAAATGATT CATCCATAGG CATCGAAATA
GTCAATGTGC CTGAATGCCA CTTTGACAAA GAGGCCAATA CAACCTCTGA GCACGGCGAG
AACCGCTTAT GCGTATTTCC CGATTACGAC CCGAAGCAAA TCGAGCTATT AATTGCCTTA
AGCCAACAAA TACTGGCCCG TAATCCAGAC ATATCGCCTA CTAAAGTGGT GGGGCACTCA
GATATCGCCC CGTCGCGTAA AAACGATCCA GGCCCAAGGT TTCCTTGGTT TGAGCTGTAC
CAAGCTGGGA TAGGTGCTTG GTATGAAAAC GAGACTTTTG AGGCCTATTG GCAGCGTTTT
AATCAGTACC AACCGAATAT TGGTCTAATA CAAAGTGCTT TACGTGCCTA TGGCTACAAT
GTGCTGGAAA CGGGCATACG TGATGAACAA ACAAGCAATG TGATCAGTGC GTTTCAAATG
CACTTCTTAC CCTGGCAAGT GACCGGTAAA GCAGACAGTA AAACCGCCGC CGCTGTGTTT
GCCTTACTCG ATAAATACTT CCCTAAAAAA GCCAAAAAAT TGATGGCCCG CTACATTGAC
GAGCAAGTGG CTGAGTCAAC AGAGCCGATG GCGATAAAGC AGGGGCAAGT GGATGAAGTA
TTCCCCATGC AGGAACGCAG TACTCGGCAA TGGGTAAACG ACCGTGAACG TTTTAAAGCG
TACCAGGGGC GGGGTGAGAT TCAGATTAAT AGTCAAGGTG CAGAGCAAGC TGATATCTAC
GTTAATGGGC AAAAACTCAA TATAGCGCAA CCCTTTGCGC CAAACGAACG GTACCAGTAC
AGCTTGAAGC GTCGTACCAA AGACGGCACT AACACCTTGC GCGTAGAGAA TATTTTACCA
GAGGGCAGCG AGCTCAAAGT GACTATTCCG TCACCTATCC TAATGGACAC CAGCACGTCT
CAGCACAATC GTTTTGCTCA AGTCGATGCA CTTATTCAGC GAGATATCAA TAACGGATTC
CCCGGTGCGG TATTGTTGGT GGTAAAAGAC GGGGAAATCG TAAAACGAAC CGCATACGGT
GATGCGCGAC AATACGCTGA TGGAGGAGAG TTGCTCCCCG AGTCGCAGAA AATGCAGGTC
GATACGCTTT TTGATATTGC TTCGAACACA AAAATGTTTG CTACCAACTT GGCCTTGATG
AAGCTGGTAA GCGCAGGCAA ATTAGACGTC AATGCGCCTA TTCAGCGCTA CATGCCAGAC
TATAAAGGTG GCGGGCGAGA AACGCGTTTA GTGCGCGATT TACTCACCCA TACCGCTGGT
TACGCCCCTC AAGTGCGGTT TTTTACGCCT GAAAATGGCG TCAGTAAGAG CTTGTATTCC
CAGAACCCAC AGCGAACGGA TCAGTTACTG CTAAACCGTG TGCCATTTGC CATGGGGCGC
AATGTTAAAG CGGTATACAG TGACACTGAC TATATGTTAC TGGGCATGTT GGTTGAGCGT
ATTACGGGAA TGGGACTAGA TGCCTACGTT GAGCATCAGA TTTATCAACC ATTGGGGTTG
AGCAATACCT TATTTAACCC GCTATTAAAG GGCCGAGCAA AAGGTGAATT TGCCGCCACC
GAAATACAAG GCAATAGCCG GGGTGGTCGT GTCAACTTCG ATAATATGCG CGAGTATGTG
TTGCAGGGTG AAGTGCATGA TGAAAAAGCC TTTTATTCAC TTGGCGGTGT AGCAGGTCAT
GCTGGGTTGT TTTCTACCGT AGACGATTTA GCCGTGCTGG GGCAGTTGTT ATTGAACGGT
GGTGGCTACG GCAAAACTCA AATCTTTGAT GAAGCAGTGT TACAGCAGTT TATTAAGCCA
GAAGAGCGGA ACGACAGTTA TGGACTTGGC TGGCGCCGAG CAGGCCATGG CCAAAGCAAA
TGGCATTTCG GTCCTTACGC TAGTGCTCAG GCTTATGGTC ATACGGGCTG GACAGGCACC
GTATCAGTGA TTGACCCCAA ATATGACTTG GCTATTTTCT TGCTCACCAA TGCACGGCAC
TCAAAAGTGC AAGAAGACGA AAGCGGCCAT GTCGAATTTG CAGGTAAAAC GTTTGAAACC
GGCAAGTACG GCAGTGTGAT TAGTTTGGTG TACGAAGCAA TTCTAGACAG TAAATAA
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| Protein sequence | MKKRITSWQR SVLICLLTVA IVSCATLPIS EMPSKNFSHR VKFLVMHFTA IDYQKSVHAL
VDEGGLSAHY LIPESNDPSY PKDSLEILKL VDEDKRAWHA GNSVWQGRSE LNDSSIGIEI
VNVPECHFDK EANTTSEHGE NRLCVFPDYD PKQIELLIAL SQQILARNPD ISPTKVVGHS
DIAPSRKNDP GPRFPWFELY QAGIGAWYEN ETFEAYWQRF NQYQPNIGLI QSALRAYGYN
VLETGIRDEQ TSNVISAFQM HFLPWQVTGK ADSKTAAAVF ALLDKYFPKK AKKLMARYID
EQVAESTEPM AIKQGQVDEV FPMQERSTRQ WVNDRERFKA YQGRGEIQIN SQGAEQADIY
VNGQKLNIAQ PFAPNERYQY SLKRRTKDGT NTLRVENILP EGSELKVTIP SPILMDTSTS
QHNRFAQVDA LIQRDINNGF PGAVLLVVKD GEIVKRTAYG DARQYADGGE LLPESQKMQV
DTLFDIASNT KMFATNLALM KLVSAGKLDV NAPIQRYMPD YKGGGRETRL VRDLLTHTAG
YAPQVRFFTP ENGVSKSLYS QNPQRTDQLL LNRVPFAMGR NVKAVYSDTD YMLLGMLVER
ITGMGLDAYV EHQIYQPLGL SNTLFNPLLK GRAKGEFAAT EIQGNSRGGR VNFDNMREYV
LQGEVHDEKA FYSLGGVAGH AGLFSTVDDL AVLGQLLLNG GGYGKTQIFD EAVLQQFIKP
EERNDSYGLG WRRAGHGQSK WHFGPYASAQ AYGHTGWTGT VSVIDPKYDL AIFLLTNARH
SKVQEDESGH VEFAGKTFET GKYGSVISLV YEAILDSK
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