| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4147 |
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| Symbol | |
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| ID | 4175936 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4984962 |
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| End bp | 4986455 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638057183 |
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| Product | sodium/proline symporter |
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| Protein accession | YP_663700 |
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| Protein GI | 109900445 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0591] Na+/proline symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR02121] sodium/proline symporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTACA TTTCTTTAGC AGTATATTTT ATCGCTATGC TGGGGATAGG TGTGTTCGCT
TATCGCCGTT CGACTAGTGA TATGTCTGGC TATATCTTAG GTGGCCGCCA AGTCAGCCCT
CAAGTCACTG CACTTTCTGC AGGGGCATCA GACATGAGTG GCTGGATGCT TATGGGGCTT
CCTGGAGCCA TGTTCGTTAG CGGGTTTGAT AGCATGTTTA TTGCTATTGG CTTGTTAGTC
GGCGCGCTGG CTAACTATAT TTTGGTTGCC CCGAAATTAC GGGTTTACAC CGAGGTTGCT
AATGACGCTC TGACTATTCC TGAGTTTTTC GCCAAGCGCT TCAACAATAA GACAAGTAGT
ATCCGAATCA TTTCTGCGGT GATCATTGTG ATGTTTTTCA CTCTCTATAC CTCTGCGGGC
TTGGTTGCTG GGGGCAAGTT ATTTGAATCT GCTTTCGGTT TAGATTACCA ACTTGGGCTA
TTTATTACCT TAGGCGTTGT GGTGTCTTAC ACTCTGCTGG GTGGCTTCTT GGCGGTATCG
CTAACCGATT TTGTTCAGGG CTGTATTATG TTCGTTGCTT TGGCTTTAGT GCCCATTGTT
GCATACCAAC ATTTTACCAG TAGTAACGAA ATGCTCGACT TTGCGTATCA GTCGATCCCG
ACATTCACTC AGTCGATGAG TGATATAACC GCTCTTGGTT TGGTGTCTAG TTTAGCGTGG
GGATTGGGGT ATTTTGGTCA GCCGCATATT ATTGTGCGAT TCATGGCTAT TCGCTCGGTG
CCTGCGGTTA AAACGGCACG TAATATTGGC ATGAGTTGGA TGACGGTCAC TATTACAGGC
GCCCTGTCTA CTGGCTTGGT TGGCGTTGCG TATGCTAATA AATTTAACTT AGCAGTGGAT
GACCCTGAAA CTATCTTCAT CATTTTCTCA GAATTGCTAT TTCACCCGTT GATCAGTGGC
TTCCTATTAG CTGCGATTTT AGCGGCTATC ATGAGCACCA TTTCTTCGCA ATTGCTGGTA
TCAGCCAGTT CTTTGACCGA AGACATCTAC CGCCTCAAAG CGGGCAATGA AGTCAGCGAT
GAGCAAACTG TAAAAATGGG ACGCTATGGC GTTGCAGGTG TAGCAATCGT CGCCTTGTTA
CTATCACTGG ATAGTAACAA TAGTATTTTA TCATTGGTCA GCAATGCGTG GGCCGGCTTT
GGCGCCGCAT TCGGACCGTT AGTGTTGTTT TGCTTGTACA AAGCAAATTT AACCCACAAA
GCTGCTGTAG CAGGCATCGT ATCCGGTGCT GTAACCGTGT TGGTTTGGAT TTATGTGCCA
CTGCTACCCA ACGGACAAAC GCTTTCCAGC GTGATGTACG AAATTGTCCC AGGCTTTATT
GTAAGTGCTG CTGTTATCTG GCTGGTGAGT CAGTTTGGTG AAAAACCAAG TAAAGCCACA
GCGGCTATGT TCGACGAAAC CAATCAGGTT TTAGCCAAAC AACATTCAAA TTAA
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| Protein sequence | MSYISLAVYF IAMLGIGVFA YRRSTSDMSG YILGGRQVSP QVTALSAGAS DMSGWMLMGL
PGAMFVSGFD SMFIAIGLLV GALANYILVA PKLRVYTEVA NDALTIPEFF AKRFNNKTSS
IRIISAVIIV MFFTLYTSAG LVAGGKLFES AFGLDYQLGL FITLGVVVSY TLLGGFLAVS
LTDFVQGCIM FVALALVPIV AYQHFTSSNE MLDFAYQSIP TFTQSMSDIT ALGLVSSLAW
GLGYFGQPHI IVRFMAIRSV PAVKTARNIG MSWMTVTITG ALSTGLVGVA YANKFNLAVD
DPETIFIIFS ELLFHPLISG FLLAAILAAI MSTISSQLLV SASSLTEDIY RLKAGNEVSD
EQTVKMGRYG VAGVAIVALL LSLDSNNSIL SLVSNAWAGF GAAFGPLVLF CLYKANLTHK
AAVAGIVSGA VTVLVWIYVP LLPNGQTLSS VMYEIVPGFI VSAAVIWLVS QFGEKPSKAT
AAMFDETNQV LAKQHSN
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