| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4125 |
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| Symbol | |
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| ID | 4175914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4960184 |
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| End bp | 4963360 |
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| Gene Length | 3177 bp |
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| Protein Length | 1058 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638057161 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_663678 |
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| Protein GI | 109900423 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0790876 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTTCGC AGTTTTTTAT ACGCCGTCCC ATATTTGCGG CCGTTATCTC GCTGATTTTC
TTTATCGTAG GGGCCATTTC TGTTTGGCAA CTGCCGATAA CAGAATATCC GGAAGTGGTT
CCCCCGACTG TGGTCGTGAC CGCAAACTAC CCAGGTGCAA ATCCAAAAGT GATTGCCGAA
ACAGTGGCAT CACCTCTTGA GCAGGAGATT AACGGTGTGG AGAACATGTT GTACATGTCT
TCTCAGGCCA CCTCTGATGG CACTATGACA CTCACCATTA CATTTGCCAT TGGTAGCGAT
GTAGACTTGG CGCAAACTCA AGTGCAAAGC CGTGTTGAAC GTGCCAAGCC GCGTCTTCCT
GAGGAGGTAC AACGCCTTGG TGTTGTGACC GAAAAATCAT CACCAGATTT AACCATGGTG
GTGCATTTAA CCTCTCCTGA TGAACGCTAC GACATGTTGT ATTTGTCTAA CTACGCGGTG
CTAAACGTCA AAGACGAGCT CGCTCGCATT AACGGGGTTG GCCAAGTGCG CGTATTCGGT
GCCGGCGATT ACAGCATGCG TGTATGGCTA GACCCAAATA AAGTGGCTGC ATTGGGCTTG
TCTCCAGCAA ATATTGTGGC GGCTATTCGT GAGCAAAACC AACAAGCTGC TGCTGGGAGC
CTAGGTGCTC AGCCTAGTGG CGACAGCGAC TTTCAGCTGT TAATTAATGT TAAAGGTCGC
TTGACGGATG TAGAAGAATT TGAGGACATC ATTGTTAAAG TGGGCGAACA AGGCCAAATT
AGCCGCTTAA AGGATGTTGC ACGCGTTGAA CTTGGCGCAT CAACTTATGC CCTTCGTTCT
ATGCTCGATA ATAAAGACGC TGCCGCCATG CCTGTATTTC AAGCATCGGG CTCTAACGCG
ATCCAAATTT CTGATGATGT ACGCAGCAAG ATGGCTGAGC TATCTAAGAG CTTCCCTGAA
GGTTTGAGTT ACGACATCGT TTACGACCCA ACCGTATTTG TGCGAGGCTC AATTGAAGCC
GTGGTTAAAA CCTTGTTCGA AGCCCTACTA TTAGTGGTAT TGGTTGTGGT GCTGTTCTTA
CAAACGTGGC GCGCCTCGAT CATTCCTTTG GTCGCAGTTC CTGTATCTCT GGTTGGCACC
TTTGCCTTCA TGCATCTGTT AGGCTTTTCA CTTAATGCCT TATCGCTATT TGGCTTGGTA
CTCGCCATCG GTATTGTAGT AGATGACGCC ATCGTGGTGG TTGAAAACGT TGAGCGCAAC
ATCGCAGATG GCTTATCCCC TATCGCTGCA ACCCAAAAAG CCATGAAAGA AGTCACTGGC
CCTATCGTAG CGACCACCTT GGTTCTAGCG GCAGTATTTA TTCCAACGGC ATTTATGTCA
GGCCTAACGG GGCAGTTTTA CAAGCAGTTC GCCCTGACCA TTACTATTTC AACCTTTATC
TCGGCGATTA ACTCGCTAAC GCTAAGCCCT GCATTATCAG CCTTATTGCT TAAAAGTCAT
GACAGCAAGA AAGATGCCCT GACCCGAGGC ATGGACAAAC TGCTCGGCGG CTGGTTATTT
AACCCATTTA ACCGCTTATT CACTCGTTTA TCAGACGGCT ACGGCTGGGT CGTTAAAAAA
GTTCTGCGCT TTGGTGTTCT GGTTGGTGTG ATTTATATCG GCTTGGTTAG CTTGACCGGT
TTGCAATTCG CCACCACGCC TACGGGCTAT GTACCCGGCC AAGACAAACA ATATCTAGTG
GCATTTGCCC AGTTACCTGA TGCAGCCTCG CTTGATCGCA CAGAAGAAGT CATTAAAGAA
ATGTCTCGCA TTGCGCTTGA GCAACCCGGA GTGGCCAACT CAGTTGCCTT CCCTGGTTTG
AGCATTAACG GCTTCACCAA CAGCACCAAC AGCGGTATCG TTTTTACTCC TCTTGATGAC
TTTGCGGATC GCACAGACCC GTCATTGTCA GCAGGTGCCA TTGCAGCAGC GCTCAATCAG
AAATTTGCCG CCATTGAAGA TGCATACATT GCTATTTTCC CGCCGCCGCC GGTACAGGGC
TTAGGCACCA TCGGTGGCTT TAGGCTGCAA ATTCAAGATC GCGCCAATTA TGGTTATGAC
GAGCTGTACA AAGTCACCAT GCAAGTAATG CAAAAAGCGT GGGCGACGCC TGAACTAGCC
GGAGTGTTCT CTAGCTATCA AATCAACGTG CCTCAGCTAG ATGTAGACAT TGATCGCACC
AAGGCTAAGC AGCAGTCTGT TTCGCTTGAT GAGCTATTCA CTACTTTGCA AGGTTATATG
GGCTCGGTAT ACGCCAATGA CTTCAACCAG TTTGGGCGTA CTTACCAAGT CAATGTGCAA
GCGGATGAGC AATTCAGACA AACGCCTGAG CAAATTGCCC AGCTCAAGGT ACGTAACAAT
AAGGGTGACA TGGTACCCAT CGGCTCGTTT ATTAACGTGA ACAATACCGC AGGCCCTGAC
CGCGTGATGC ACTACAACGG CTTTACCACC GCTGAGATTA ATGGCGGCGC AGCGCCAGGC
TTTAGCTCAG GTGAAGCACA AGCTGCGATT GAAAAAATAT TAGCACAAAC CTTGCCCAAC
GGCATGACCT ACGAGTGGAC AGAATTAACC TATCAACAAA TATTGGCGGG CAATGCAGGC
ATGTATATCT TCCCGTTGAT CATCCTGTTG GTATTCATGG TGTTAGCCGC TCAGTACGAG
AGCTTAAGCT TACCTTTGGC GATTATTTTG ATCATCCCGA TGACGTTACT ATCAGCGTTA
AGCGGCGTAC TTATCGCCGG AGGCGACAAC AATATATTCA CCCAAATTGG CTTTATTGTG
CTGGTAGGAC TGGCAACCAA AAACGCCATT TTAATTGTTG AGTTCGCCAA AGAATTGCAA
GACGAAGGGA GTACCGCTTA TGAGGCAATC CTTGAATCTG GCCGCTTACG GTTGCGCCCA
ATATTGATGA CCTCTATCGC ATTCATTATG GGGGTAGTGC CAATGGTGTT CTCAAGTGGC
GCAGGCTCTG AGATGCGCCA AGCCATGGGC GTTGCTGTGT TCTCAGGCAT GATCGGGGTC
ACCGTGTTTG GTCTACTTCT TACGCCATTA TTTTACTACG TGCTCGCTAG AAGAGGCGAG
CGTCAATCTA GCAACGCCCT AGTAAACACC GCCAAACAGG AGGCTGACCA TGGGTAA
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| Protein sequence | MFSQFFIRRP IFAAVISLIF FIVGAISVWQ LPITEYPEVV PPTVVVTANY PGANPKVIAE
TVASPLEQEI NGVENMLYMS SQATSDGTMT LTITFAIGSD VDLAQTQVQS RVERAKPRLP
EEVQRLGVVT EKSSPDLTMV VHLTSPDERY DMLYLSNYAV LNVKDELARI NGVGQVRVFG
AGDYSMRVWL DPNKVAALGL SPANIVAAIR EQNQQAAAGS LGAQPSGDSD FQLLINVKGR
LTDVEEFEDI IVKVGEQGQI SRLKDVARVE LGASTYALRS MLDNKDAAAM PVFQASGSNA
IQISDDVRSK MAELSKSFPE GLSYDIVYDP TVFVRGSIEA VVKTLFEALL LVVLVVVLFL
QTWRASIIPL VAVPVSLVGT FAFMHLLGFS LNALSLFGLV LAIGIVVDDA IVVVENVERN
IADGLSPIAA TQKAMKEVTG PIVATTLVLA AVFIPTAFMS GLTGQFYKQF ALTITISTFI
SAINSLTLSP ALSALLLKSH DSKKDALTRG MDKLLGGWLF NPFNRLFTRL SDGYGWVVKK
VLRFGVLVGV IYIGLVSLTG LQFATTPTGY VPGQDKQYLV AFAQLPDAAS LDRTEEVIKE
MSRIALEQPG VANSVAFPGL SINGFTNSTN SGIVFTPLDD FADRTDPSLS AGAIAAALNQ
KFAAIEDAYI AIFPPPPVQG LGTIGGFRLQ IQDRANYGYD ELYKVTMQVM QKAWATPELA
GVFSSYQINV PQLDVDIDRT KAKQQSVSLD ELFTTLQGYM GSVYANDFNQ FGRTYQVNVQ
ADEQFRQTPE QIAQLKVRNN KGDMVPIGSF INVNNTAGPD RVMHYNGFTT AEINGGAAPG
FSSGEAQAAI EKILAQTLPN GMTYEWTELT YQQILAGNAG MYIFPLIILL VFMVLAAQYE
SLSLPLAIIL IIPMTLLSAL SGVLIAGGDN NIFTQIGFIV LVGLATKNAI LIVEFAKELQ
DEGSTAYEAI LESGRLRLRP ILMTSIAFIM GVVPMVFSSG AGSEMRQAMG VAVFSGMIGV
TVFGLLLTPL FYYVLARRGE RQSSNALVNT AKQEADHG
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