| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4114 |
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| Symbol | |
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| ID | 4175903 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4945940 |
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| End bp | 4947985 |
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| Gene Length | 2046 bp |
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| Protein Length | 681 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638057150 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_663667 |
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| Protein GI | 109900412 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0872728 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGTTTA GAACCATCAA GAACACAACG ACCATGCTCA CTGTGGTAGC GATCGTGATA
GTGTGTGCTG CCGTTGTCGC ATCCTCCGTC GAGGAGTACG AACAGTTATA TCTGGAAGCA
ACACGAGCGG ATCTTGATGG GCTATCAGAA AATTTGGCCA GTGATCTTGT GCCTCTTATC
GCCTCAGATC CTGATATCTT TGAAGTCACT ACGACGCTGT TACGGTTAGA CCGCTACGAA
AATGTAAAAT ATGCTGTTGT GTTCGATGAA AATTGGCAAC GTATTAATGT TTATTTTGGT
TCAATGTCTG TGCCTGAAGA GCTCGATTCT GCGATAAACA CCAACGAGCT TAGGCTTCAA
CCCCATGGGG TTTACGTGAA AGACGGTGAG CTTATCGCCC TCAAGCTAGT GGGGGATGCG
CGACTGCCCC TTGGCCATCT ACTCATCGTT AACGACTCAT CAGGTCCCTT ATATAGCAGT
AAATTGACGC TGCTCAAGCG TGTACTACCA CTCGTGTTCT TAGTGCTCTT TGTGGCCATC
GTTGGCTCAT TATTCGTTCA GCGTCAATTG TTTCTCCCAT TAAGCCGCCT CTCTCGCGTT
GCGAAAAGAA TTCAAGATAC TCACGATTAT TCACTGCGAA TAGACACTCG GGGAAAGCAA
GAGGTTGCAG AGCTGAGCCG CGATATTAAT AGCATGATGG AGACCATCAA CGCTGAAACA
CAAAAGAACG CGAAATATAC CGAACAGCTT AAAGAACAAC AAAAAGCCAT GGAGCGCTTG
GCAAATTTTG ATGGCTTGAC AGGTTTACCG AATCGCCAAT TCTTCATGGA AACGCTAAGG
TTAGAGTTGG CGAAAGCAAA GCGTGATGAG CGAAACTTAG TTTTAATGTA TTTTGATTTA
GACGGTTTTA AGGGAGTAAA TGACTCGTTT GGGCATGAAA TTGGTGACCT AGTATTGATG
GAAGTATGCC GTCGGACCAA AAGCATTTTA CGCGACGGTG ACTTAATCTC TCGCTTAGGC
GGGGATGAGT TTCTTATTTT ACTGCACAAC GAGCCCAATG ATTTGGAGCT GTATGAAATT
TCTGAGCGCT TAGTCAGCGG GCTCAATATG CCTTTTGAGA TTCAATCGTG GGAAGTGCAA
GTTGGTGTAA GCATTGGTAT TGCTCGTGCC AGTGATTCAA ATTTTAATGT CAGTGAATTT
GTCAGTAATG CCGACATCGC CATGTACCGC TCCAAATTAG CCGGTCGCAG CACGCACACC
GTGTTTGTGC CAGAAATGAT GGAGGACAAT AAACGGCGTT TGTTGATTGC CAACTCTATT
GCTAACGCGA TTAAGTTCAA TGAATTCAGC ATTCACTATC AAGGCAAAGT GGACGCAGAC
GAAAATATAG TCGGTTATGA GGCATTGATA CGTTGGAAAA GCGATGAACT GGGGTTTGTA
TCTCCAGCCG AATTTATACC CATTGCCGAG CAAAGCGGCA AAATTTTATC TATTACAAAG
TGGGTGATTA AACGGGTCTG CCAAGAGCTA CAGCAAGTCC ATGCATTGCA TAAAAATGAG
ATTGTGGTGT CAATCAATCT GTCGGCCCAT GACATCAAAA ATACGGCTCT CGTTGATTAT
ATCCGTGGTA TGTTCACCCG GTATAACGTT GACAATGCCA GTATTGAATT TGAAGTGACG
GAATCTGCCT ATTTAGAAAA CTTCGATGTC GCAAACCATT TTCTTACCCA GCTACGTGAA
ATGGGTTGTT CCATTGCGCT GGATGACTTT GGGGCAGGGT ATTCTTCATT GGGTTACTTG
ACCCAAATCG AGCTGAATAC ATTGAAAATA GATAAGCAGT TTGTGGATAA CTTAAACATG
TCGAAGCGCA GTACCTTAGT CACCAAAACT ATCATTGAGA TGGCTAAGCA GTTGAATTTG
AAAATATGCG CCGAGGGTGT GGAAACCAGA GAGCAAGCTG AATTTCTAAT TGAAAACGGC
TGTCATCAAT TGCAGGGATA CCTATTTTCC AAACCCAAAA GCTTACTTGA AATGCTTAGC
GTCTAA
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| Protein sequence | MLFRTIKNTT TMLTVVAIVI VCAAVVASSV EEYEQLYLEA TRADLDGLSE NLASDLVPLI
ASDPDIFEVT TTLLRLDRYE NVKYAVVFDE NWQRINVYFG SMSVPEELDS AINTNELRLQ
PHGVYVKDGE LIALKLVGDA RLPLGHLLIV NDSSGPLYSS KLTLLKRVLP LVFLVLFVAI
VGSLFVQRQL FLPLSRLSRV AKRIQDTHDY SLRIDTRGKQ EVAELSRDIN SMMETINAET
QKNAKYTEQL KEQQKAMERL ANFDGLTGLP NRQFFMETLR LELAKAKRDE RNLVLMYFDL
DGFKGVNDSF GHEIGDLVLM EVCRRTKSIL RDGDLISRLG GDEFLILLHN EPNDLELYEI
SERLVSGLNM PFEIQSWEVQ VGVSIGIARA SDSNFNVSEF VSNADIAMYR SKLAGRSTHT
VFVPEMMEDN KRRLLIANSI ANAIKFNEFS IHYQGKVDAD ENIVGYEALI RWKSDELGFV
SPAEFIPIAE QSGKILSITK WVIKRVCQEL QQVHALHKNE IVVSINLSAH DIKNTALVDY
IRGMFTRYNV DNASIEFEVT ESAYLENFDV ANHFLTQLRE MGCSIALDDF GAGYSSLGYL
TQIELNTLKI DKQFVDNLNM SKRSTLVTKT IIEMAKQLNL KICAEGVETR EQAEFLIENG
CHQLQGYLFS KPKSLLEMLS V
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