Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3919 |
Symbol | |
ID | 4175699 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 4728746 |
End bp | 4730998 |
Gene Length | 2253 bp |
Protein Length | 750 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638056947 |
Product | periplasmic sensor signal transduction histidine kinase |
Protein accession | YP_663473 |
Protein GI | 109900218 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.681981 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGTCGCT CTACCAGTCT AGCTAAAAGT CGCAAAGTGA ATCATGTTTA CAACAAGGGA CGGTTTCGAT TTCGCTTTGG TATACGCTTA AAATTACTCG CTTTGTCGAT ATTTCTGTTT GCCATTCCTT GGCTTGGGTA TCAATACGTG TGGGAGCTAG AAAGCTATCT ACGTATTGGG CAAGAGCAAA CCATGGTTGG CACTGCGCGT GCAGTTGCGA CCGCCTTGCA TGAGCGGCCC GCTTTATTTG ATACCCAAAG CGCTTACCTG ACCGATGTAA AACCTGGGAC CGACTTATAC GCCCATAAAA TTCACGACCC AATCCGCTTA GATGGCAAGC TAGATGATTG GTTGGATTAT CAGCATTTAA GCCTTGAGTA TGGGCGAGCG CATCTACTTG ATTACCTTAA TGACAGCGAC GATTACCAGC CCAGCAGCTT GCATTTTCGG CATATGGTGG GGCAATTTGG TGAGTACCTA TACGCCATGT TCGAAGTCAC CGATGAGAGG GTATTGCTAA GGGCTAAAAA CAGTCTGCGG GTCGACCGGA ATGACTATCT GCAAATAGCC ATGACTGGCC CTGACGGTAG CTTTAAACGC TATGTTGTGG CTCCGCAAGA GGCAGGCTGG GTTAACGCGT ATTTGCTATC TGAATCTGTG GACTCTATGC GCCCTGTTTC ACTTGAAACG CAAATTCAAG GCCGATGGTT AAACACTGCT AAGGGCTACA ACGTAGAACT GCGATTCCCT TTGGCCATGA TGAGTAGCAA AATCGCCTTT GCCATTACGG ATGTTGACGA CCCACAAACT CGGGAAATAC GCTATCGCAT AGGTACCGCC AACCCGAACA AGAGCGATAC CCTTGGCACG GTTTTGGTGC CATCACCGGA GATAGAGAAC ATTCTCAAAG GGTTAAAATA CTCAAACGCA AGGGTATGGG TCATTGATAA ACACAAACGG GTACTGGCTC GCTCTGGCAA TATTCATAAA TCGGTTGGTT TAAGCAGCAG CGCTTATTCA TCAAACAAGG ATCAGCAAGC TAGCTGGTGG CAAAGCATAG AGCAGAAATG GTTATTACCC CTGTACTATC AAATTCTGAC CAAGCCCCCA GCGGATTTTA TTGATGACTT ACAAGATGCG TATGCGTTGC AAGGACAAGA TATTAATCAA GCGCTAATGG GGACACCGGC CTCTTTATGG CGCCTAAGCC CAGATAATAA AGCGGTTATT CTGTCGGCGG CGCACCCCAT TTTTATAGAT GAGAATGTGA TGGGGGCTGT GGTCGTTGAG CAAACCACCA ACGGTATTCG CACGCTAAGA AACCTCGCCC TCGAAAAACT ATTTCATGTG ATATTAGCCG TGATGGGGTT AGGGACCTTG GCGCTTTTTT TATTCGCCTC TAGGATGTCG TTTCGCATCC GTAAGCTTAG AAATCAAACA GAGGCGGCGA TTGACCAGCA CGGTAAAATC ATTGGCACAA TTCCCAGTGC CACCGCGGGA GATGAAATTG GTGATTTAGC GAACACGTTT AATATCGTGC TGAGTAAACT TGGGCAGTAC AACACTTATT TGCAAAATAT GTCAGCCCGT TTATCCCATG AGTTGCGCAC CCCTGTGGCA ATAGTGAAAT CGTCCTTAGA AAATCTGCAA TTAAGTCAGC AGACAGATGA AGATGCCCAG TACATTGAAC GAGCGCAACT TGGGATTAAA CGCCTCAGCA CGATTTTAAA TAATATGAGT GAAGCGACCA GATTGGAGCA GGCAGTACAA AGCAACGAGC GAGAGGACTT TGATATGAAC GCCTTGCTCA GCGGCTATGT CGAAGGTTAT CGAATGACCT ACGCTAGTCA TAAGTTTGCT TACGTAAACG AGGCAGGGGA TGTGCTGCTG CTCGGCTCAG GTGATTTATT TGGCCAAATG CTGGATAAGA TCATTGCCAA CGCCCTTGAG TTTAGTCCTG AGCATACCCT TATTTTTATC CGACTTAGCC TGAAAGAAAG TAAGTATTTA CTTACCATTG AAAATGATGG CCCACCGTTA CCGAATGATA TGGAGGATAA GCTATTTGAT TCCATGGTAT CGGTACGCCC TGAGCATGCT ACTTCACAGC CACACCTTGG GTTGGGGCTA TTTATTGCTA AGGCAATTGC ACAATTTCAC GGTGGTGATA TTCAGATAGA AAACCGTTAT TCAGAAGCGG ATGAGCATCT TGGTGTGCGC GTATCGTTAG TTTTTTCAAA ACAGCGGTTC TAG
|
Protein sequence | MSRSTSLAKS RKVNHVYNKG RFRFRFGIRL KLLALSIFLF AIPWLGYQYV WELESYLRIG QEQTMVGTAR AVATALHERP ALFDTQSAYL TDVKPGTDLY AHKIHDPIRL DGKLDDWLDY QHLSLEYGRA HLLDYLNDSD DYQPSSLHFR HMVGQFGEYL YAMFEVTDER VLLRAKNSLR VDRNDYLQIA MTGPDGSFKR YVVAPQEAGW VNAYLLSESV DSMRPVSLET QIQGRWLNTA KGYNVELRFP LAMMSSKIAF AITDVDDPQT REIRYRIGTA NPNKSDTLGT VLVPSPEIEN ILKGLKYSNA RVWVIDKHKR VLARSGNIHK SVGLSSSAYS SNKDQQASWW QSIEQKWLLP LYYQILTKPP ADFIDDLQDA YALQGQDINQ ALMGTPASLW RLSPDNKAVI LSAAHPIFID ENVMGAVVVE QTTNGIRTLR NLALEKLFHV ILAVMGLGTL ALFLFASRMS FRIRKLRNQT EAAIDQHGKI IGTIPSATAG DEIGDLANTF NIVLSKLGQY NTYLQNMSAR LSHELRTPVA IVKSSLENLQ LSQQTDEDAQ YIERAQLGIK RLSTILNNMS EATRLEQAVQ SNEREDFDMN ALLSGYVEGY RMTYASHKFA YVNEAGDVLL LGSGDLFGQM LDKIIANALE FSPEHTLIFI RLSLKESKYL LTIENDGPPL PNDMEDKLFD SMVSVRPEHA TSQPHLGLGL FIAKAIAQFH GGDIQIENRY SEADEHLGVR VSLVFSKQRF
|
| |