| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3892 |
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| Symbol | |
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| ID | 4175672 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4688845 |
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| End bp | 4689726 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638056920 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_663446 |
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| Protein GI | 109900191 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGGCAA GTATTCCTTT TTACGATTTA TATGGTGAAT CCTTTATTCG CAAAGATGTT
GGTTTGGCTC ATGTAGAGGA CATTGCTTTT CGAAGCCGAG GGTTAGGATG GGAAATTGAG
CCTCACAGAC ATGACAAGCT CACCCAAATA ATTTGTACTT TTGATGACTC ATGGGTTGTC
CAACTTGATG ATAAACGATA TGAGCTAAGC GGAAACTGGT TAGTTTTAAT CCCCGCTGGT
GTGGTGCATG GCTTCGTATT TGAACCGAAT ATTCAGGGCT ATGTCGTATC GCTAAACCAG
GATGTTCTAG AGGGGACTTG CGATGCCGAC CCTCAATCGA CGTTACCAGA ACTTTTGTGG
GTGCCTTCGG TGATTGAGTT TCGTGACAGG CAGCAAATTG AGCGCTTCAT GACTTATATT
AAATTGCTCA AAGATGAACT GGTTAGCGCA GAAGCTGAGC AGGGATTAGC AATTAATCGA
CTGGTACAAA TGATATTACT CACCGTTAAA CGACAACAAC ATTTGCAAGC GGTGAGTGCA
GGCTCAAGCG GACGGGAGTC AAAGGTTTTG CTCGCGTTTC GGCACTTAAT CGAACAAAAC
TATACAAAGC ATCTATCAGT ACAAGATTAC GCCAAACAAC TGCATGTCTC TGTGTCGACC
CTTAATCGAT TATGTCAAGG GCAACTAAAT GAATCACCTA AATCAATTAT TCATCAAAGG
TTAATTAGCG AAGCGAAACG ACGGCTGATA TATACGCGTC AGAGTGTCGA GGAAATAGCA
TATACTTTGG GTTACAAAGA GCCTGGCTAT TTCAGTCGAT TTTTTAAATT AGGTGTGGGT
ATGAGTGCTG GAATGTACCG TAAAACCAGT GTGATCTCAT AG
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| Protein sequence | MSASIPFYDL YGESFIRKDV GLAHVEDIAF RSRGLGWEIE PHRHDKLTQI ICTFDDSWVV
QLDDKRYELS GNWLVLIPAG VVHGFVFEPN IQGYVVSLNQ DVLEGTCDAD PQSTLPELLW
VPSVIEFRDR QQIERFMTYI KLLKDELVSA EAEQGLAINR LVQMILLTVK RQQHLQAVSA
GSSGRESKVL LAFRHLIEQN YTKHLSVQDY AKQLHVSVST LNRLCQGQLN ESPKSIIHQR
LISEAKRRLI YTRQSVEEIA YTLGYKEPGY FSRFFKLGVG MSAGMYRKTS VIS
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