| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3799 |
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| Symbol | |
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| ID | 4175579 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4579252 |
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| End bp | 4582413 |
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| Gene Length | 3162 bp |
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| Protein Length | 1053 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056827 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_663353 |
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| Protein GI | 109900098 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTGCAC GTTTCTTTAT TGACCGCCCA GTTTTTGCCT GGGTTATATC GATTATCATC
ATGCTTACGG GTATCGCGTC GATTATGTCG CTGCCTATTG CACAGTATCC TACTGTAGCC
CCCCCCGTGA TTTCGGTAAG TACGACTTAC ACTGGGGCGG ATGCTGAAAC TGTTGAAAAC
AGTGTGACGC AAATTTTAGA GCAGCAATTA ACAGGATTAG ATGGGCTGCT ATATTTCTCA
TCTTCGAGTA CATCTGATGG CTCTGCGTCA GTAAATGTCA CGTTTGAAGA GGGCACAGAT
GCTGATTTTG CCCAAGTTCA GGTACAGAAT AAGGTACAAC AAGTGACCTC GCGCTTGCCC
GAATCGGTGC AGTCTCAAGG GGTAACAGTA ACCAAGTCCA ATACAGATTT CTTGTTGGTT
ACAGCGGTAT ACGACACCAC TGACAAAGCG TCGGCGTTTG ATATCTCTGA TTATATTTCT
TCTAGTATGG AAGATTCGCT GGCCCGAATA GATGGCGTAG GAGACACCCG TGTATTTGGC
TCACAGTACG CCATGCGTAT CTGGCTAGAC CCAACTAAAT TGGCTGCCTA TGAATTGATG
CCCTCGGATA TTACCACTGC ACTTGCAGCG CAAAACATAC AAGTGCCCGC GGGTAAAATT
GGCGCAGTCC CATCCCTTGA TAATCAAGAG CTAAACGCCA CGGTAACTGC GCAATCAATG
TTAGAAACGC CTGACCAGTT TCGCGATATT ATTTTAAAAT CAGATGCCAG TGGCGCCAGT
GTGCGCTTAG GTGACGTAGC ACGTGTTGAG ATTGGCAGTG AAAGTTACGA TGCTATACCG
CGCTTAAACG GTCACCCAGC ATCAGGTATC GCTGTAATGC TAACACCCGG TGCGAATGCA
CTTGATACCG CCACACGCGT CAAAGACAAA GTTGCCGAAC TTGCTCTTAA TTTACCTGAA
GGGTATGAGG TTACTTTCCC CCGGGACAGT ACGGATTTCA TAAAAATCTC TATCAGTGAA
GTGGTGCAAA CATTGGCCGA AGCCGTGGTA TTGGTGGTAC TGGTTATGTG GTTGTTCCTA
CAAAACTGGC GCGCCACGTT GATCCCCGCC ATTGCAGTGC CGGTGGTATT ATTGGGCACG
TTTGGCGTGT TGGCGGCGTT TGGCTTTTCA ATTAACACCT TAACCATGTT TGGTATTGTG
CTCTCTATTG GCTTGCTGGT AGATGATGCC ATAGTGGTGG TGGAAAACGT TGAGCGCCTA
ATGCGTGAGA AAAACCTTTC GCCCCGAGAC GCGACCATCG AATCTATGTC TGAAATTAGC
GGTGCTTTGA TTGGGATCGC GGTGGTATTG TCAGCGGTAT TCTTACCCAT GGCCTTTTTT
GGCGGCTCAA CAGGGGTCAT TTACAAGCAA TTCTCCATCG CGATAGTGTC ATCTATGACC
CTGTCAGTAA TTGTGGCCTT GACCTTGAGC CCTACGTTGT GTGCCAGTTT CCTGACTCAT
AAAGAGCATA GTTCTAAAGG TAAAGGCTTC TTTGCGCGCT TCAATCGTAT GTTCGACAAG
TTAACGGCGT CGTATACCAG CCAGGTAGGA AAGATAATTA CCCGTAAAGT GCGCTGGGTA
TTAGGGTATG GGGTTATTAT CGTGGTGTTA GGGTTATTAG TGGTACGTAT GCCGACAGGA
TTCTTACCCC AAGAAGACCA AGGCAGCATA ATGTTCCAAG TGAACATGCC TGTTGGCGCA
TCAATATCCA GAACGCGGGA TGTCTCTGAG CAGGTAGAGC AATACTTGCT TGAAAATGAG
TCTGAGGACA TTCAACGGGT CTTTAGTATT TCTGGTTTTA ACTTCTCCGG TAGTGGCCAA
AATGCCGGCA TGGGCTTTGT GTCGTTAACA CCATGGGATG ATAGAACTGA AGACGACCAA
AGTGCTGATG CGCTGATTGG GCGCATGAAT AAGAATCTAT CCACAATACG TGACGCAAGT
ATATTTGCTT TGTCGCAGCC TGTTATTCAA GGCTTAGGAC AAAGTAATGG TTTTACCTTT
GAATTGCAGG CGGCTCCTGG CACAAGTCGA GATGAACTCA CGACCTTGAA AGACCAATTC
ATGGCCGCTG CAAGGCAAAG TGAGCTGCTG ATGGGGGTGC GCGAAGGGGC ACTGAGTAAC
ACCCCTCAAC TAAAAATAGA CATAGATTAC GGCAAAGCGA CGTCCCTTGG ATTATCGCTG
GCGGATGTGT CTAACACCTT GACTGCTGCG TGGGCGGGCT CCTACGTAAA TGATTTTATC
GATGATGGCC GAGTGAAAAA GGTGTATATC GAAAGTGATG CGCAGTACCG CTCTAAACCA
GAAGATTTGA ATGACTGGTA TGTGCGAGGG CAAAACGCGG ATGGTGATAC CACCATGACG
TCATTTTCAG CCTTTAGCAC TTCGTCTTGG TCTAGTGCAC CACAAAGTTT GTCACGTTTT
AACGGTATTG CTTCGTATCA AATACAAGGC TCAGCCGCCA GCGGCGTAAG CTCAGGTCAG
GCAATGACTG AATTAGAGCG ACTAGTTCAA GAAGTGGGAC AAGGGAAGTT AAGCTTCGCT
TGGAGTGGTT TGTCTTATCA AGAAAAGCTC TCAAGCGGTC AGTCCACTAT GTTATATGCG
ATATCGATTT TGGTGGTGTT CTTAGCCCTT GCTGCACTCT ATGAAAGCTG GTCTGTGCCT
TTATCAGTCA TATTGGTTAT TCCACTTGGG GTGGTGGGTG CTGCGCTGGC TTCAACCCTG
CGCGGGCTTG AAAACGATAT TTACTTTCAA GTGGCCTTGT TGACCACCAT AGGGTTGGCC
TCTAAAAACG CCATACTCAT AGTTGAGTTT GCTGAAGCGT CTTATCAAAA AGGTATGTCG
TTAGTAGGTT CTGCTGTTGA AGCCGCTAAG CTTCGCTTAC GCCCGATCAT CATGACTTCG
CTGGCCTTTA TGTTTGGTAT TTTGCCGTTG GCAATTTCAT CTGGTGCTGG CGCGAACAGT
CGAATTTCAA TCGGTACCGG TATTTTAGGC GGCACGCTTA CGGCGACGAT TTTCGGGATT
TTCTTTGTCC CTTTATTCTT TGTGATCATT CGCGGGATCT TCTCAAAAAG ACGCCCTGTT
TATCATGATG AGACTAAAAA AATGGAGAAT GCCCGTGATT AA
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| Protein sequence | MFARFFIDRP VFAWVISIII MLTGIASIMS LPIAQYPTVA PPVISVSTTY TGADAETVEN
SVTQILEQQL TGLDGLLYFS SSSTSDGSAS VNVTFEEGTD ADFAQVQVQN KVQQVTSRLP
ESVQSQGVTV TKSNTDFLLV TAVYDTTDKA SAFDISDYIS SSMEDSLARI DGVGDTRVFG
SQYAMRIWLD PTKLAAYELM PSDITTALAA QNIQVPAGKI GAVPSLDNQE LNATVTAQSM
LETPDQFRDI ILKSDASGAS VRLGDVARVE IGSESYDAIP RLNGHPASGI AVMLTPGANA
LDTATRVKDK VAELALNLPE GYEVTFPRDS TDFIKISISE VVQTLAEAVV LVVLVMWLFL
QNWRATLIPA IAVPVVLLGT FGVLAAFGFS INTLTMFGIV LSIGLLVDDA IVVVENVERL
MREKNLSPRD ATIESMSEIS GALIGIAVVL SAVFLPMAFF GGSTGVIYKQ FSIAIVSSMT
LSVIVALTLS PTLCASFLTH KEHSSKGKGF FARFNRMFDK LTASYTSQVG KIITRKVRWV
LGYGVIIVVL GLLVVRMPTG FLPQEDQGSI MFQVNMPVGA SISRTRDVSE QVEQYLLENE
SEDIQRVFSI SGFNFSGSGQ NAGMGFVSLT PWDDRTEDDQ SADALIGRMN KNLSTIRDAS
IFALSQPVIQ GLGQSNGFTF ELQAAPGTSR DELTTLKDQF MAAARQSELL MGVREGALSN
TPQLKIDIDY GKATSLGLSL ADVSNTLTAA WAGSYVNDFI DDGRVKKVYI ESDAQYRSKP
EDLNDWYVRG QNADGDTTMT SFSAFSTSSW SSAPQSLSRF NGIASYQIQG SAASGVSSGQ
AMTELERLVQ EVGQGKLSFA WSGLSYQEKL SSGQSTMLYA ISILVVFLAL AALYESWSVP
LSVILVIPLG VVGAALASTL RGLENDIYFQ VALLTTIGLA SKNAILIVEF AEASYQKGMS
LVGSAVEAAK LRLRPIIMTS LAFMFGILPL AISSGAGANS RISIGTGILG GTLTATIFGI
FFVPLFFVII RGIFSKRRPV YHDETKKMEN ARD
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