| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3749 |
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| Symbol | gltD |
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| ID | 4175529 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4517464 |
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| End bp | 4518879 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638056779 |
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| Product | glutamate synthase subunit beta |
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| Protein accession | YP_663305 |
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| Protein GI | 109900050 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
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| TIGRFAM ID | [TIGR01318] glutamate synthase small subunit family protein, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTAAAA ACGTATACCA ATTTGTTGAC GTAGAACGTA TCGACCCGCC CAAAAAGCCG
ATCGTTGTTC GTAAAGCAGA ATTCGCTGAA ATCTATCAGC CTTTGACCCA ATCGCAAACA
GAGGGTCAAG CTGACCGCTG TTTAGATTGC GGTAACCCGT ATTGTGAATG GAAATGCCCA
GTGCATAACT TTATCCCTCA GTGGCTCGAA TTAGCCAACC AAGGGAAAAT TTTAGAAGCG
GCTGAGCTTT CTCACAAAAC CAACAGTTTG CCTGAAGTCT GTGGCCGTGT TTGTCCACAA
GACCGTTTAT GTGAAGGCGC GTGTACCTTA AACGATGACT TTGGTGCCGT CACCATTGGC
AGTATTGAAA AATACATTAC TGATACCGCC TTTCAGATGG GCTGGCGTCC TGACATGTCA
GGTGTTGTAG CCACCAACAA GAAAGTCGCC ATTGTCGGTG CAGGGCCTGC TGGCCTTGCC
TGTGCGGATA TTCTAGTACG TAATGGCGTC AAACCCGTTG TGTATGACAA ATACCCAGAA
ATCGGCGGCT TGCTGACCTT CGGTATTCCG GCCTTTAAGC TTGAGAAAGA CGTGATCACC
CGTCGTCGTG AAATTTTCAC TGAAATGGGC GTCGAGTTTG TACTCAATAC TGAAATCGGC
AAAGACATCG ACTTTCAAAC CTTGCTTGAT GAATACGATT CCGTGTTCTT AGGCATGGGG
ACGTACAAGC CAATGCAAGG TGGTTTTGCG AATGAAGGCG CACCGGGTGT TTACGAAGCC
CTGCCCTTCT TGATTGCCAA CATTAACCGT CACCTTAAGT TTGAAAAATC AGCGGATGAA
TTCGTTGATA TGAAAGGCAA AAAGGTCGTG GTGTTAGGCG GTGGTGATAC CACCATGGAT
TGCGTACGTA CATCTATTCG CCAAGGCGCC ACAGATGTTA TCTGTGCCTA TCGTCGTGAT
GAAGACAGCA TGCCTGGTTC ACGCCGTGAA GTAGTTAACG CCAAAGAAGA AGGCGTTGAA
TTCACCTTTA ACGTACAACC ACTGGATATC GAACTAGATG CCAATGGTAA TGCGTGTGGC
GTACGCTGCG TGAAAACCGA AATGGGCGAG CCGGATGCAG AAGGCCGTCG TCGTCCTGTT
GTCATCGAAG GCTCAGAACA TGTCATTGAA GCTGACGCAG TCATCATCGC GTTTGGCTTT
CAGCCTAGCC CTGCGGGCTG GTTTGGTGAC TACGGTATTA TCCTGGATGA AAAGGGTCGT
GTACGCGCTC CTGCTAAAGG AAAGTATGCA TTTCAAACGT CTAATCCTAA GATCTTCTCT
GGTGGCGATA TGGTGCGAGG CTCTGATCTA GTCGTTACTG CTATTTTCGA AGGCCGCGAA
GCCGCAGAAG GTATGCTCGA CTACATGGGC GTGTAA
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| Protein sequence | MSKNVYQFVD VERIDPPKKP IVVRKAEFAE IYQPLTQSQT EGQADRCLDC GNPYCEWKCP
VHNFIPQWLE LANQGKILEA AELSHKTNSL PEVCGRVCPQ DRLCEGACTL NDDFGAVTIG
SIEKYITDTA FQMGWRPDMS GVVATNKKVA IVGAGPAGLA CADILVRNGV KPVVYDKYPE
IGGLLTFGIP AFKLEKDVIT RRREIFTEMG VEFVLNTEIG KDIDFQTLLD EYDSVFLGMG
TYKPMQGGFA NEGAPGVYEA LPFLIANINR HLKFEKSADE FVDMKGKKVV VLGGGDTTMD
CVRTSIRQGA TDVICAYRRD EDSMPGSRRE VVNAKEEGVE FTFNVQPLDI ELDANGNACG
VRCVKTEMGE PDAEGRRRPV VIEGSEHVIE ADAVIIAFGF QPSPAGWFGD YGIILDEKGR
VRAPAKGKYA FQTSNPKIFS GGDMVRGSDL VVTAIFEGRE AAEGMLDYMG V
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