| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3687 |
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| Symbol | |
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| ID | 4175467 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4449848 |
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| End bp | 4452004 |
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| Gene Length | 2157 bp |
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| Protein Length | 718 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056717 |
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| Product | glycoside hydrolase, clan GH-D |
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| Protein accession | YP_663243 |
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| Protein GI | 109899988 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3345] Alpha-galactosidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0371058 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCAAC ATGCAGCACA ATTCATTGCC CTTCATGGGC AAAAGAGCAG CCTAGTTTTA
GACGTCGGGT ATGAAACACC ACAAATAATT TACTGGCGCG CTAAGCTGTC AGAACAATCC
ACTGGCGATA TGATGCGCGC GCTTCGCTTA CGTCAAGAAG CGCCCGTCTC CCCTATTGTT
GAACTTGACC TATGCATCAC ACCTACATCC GGCCAAGGCT TTACTGGGTT ACCTGGGCTA
AGTTTGCATG GCGGCAGCGA CCAGTGGGCT GCGAACCCTA AGTTAAAGAA AGTGACACAG
AATAATGAAT ACAGCGTCAC GCTTACCAGC ATAGATGCCG CTCGCGGTGT TGAAGTCGTT
GTCACCATAA AACTAGACCA AGACACAGAT GTACTGACTT TTGATACCGC TTTAAATAAC
ATCACTGAGC AAACCATCAC GCTTGACTGG TGCGCAGCAG CCACTATTCC AACCCCAGCG
GACTTTGATC AAATTATCGG CTTTGAAGGC CATTGGGCGG GTGAGTTTCA ACAACACTCG
CTGGATAAAT TCTTTGGCTC ATACGTGCGC GAAAATCGTC GTGGCAAAAC CTCACACGAC
AGCTATCCAG CCCTATTGTT GCACCCTAAA ACCACCAATC AAGCTCAAGG TGAAGCCTAT
GGTTTTCATT TAGGTTGGAG TGGTAATCAC AAAATCGTCG CTGAAAAAAT GGCTGATGGT
CGCTCTTATG TGCAGATGGG CGAGTTGTTA TTTCCGGGTG AAATAGTGTT AAGTAAAAAT
CAGAGTTACC AGACGCCAAC TCTGTTTGCC AGTTACACAG ACCAAGGCTT ATCAGCTTTA
TCTCAGCAGT TTCATCAATA TGTGCGCACG CATATCATTC GCCAAAGCGT GCACGACAAA
CCTCGACCGG TGCATTACAA CACTTGGGAA GGCATCTACT TCAACCACGA CGTAGACACA
CTGAAAGACT TGGCCGAAAG AGCCGCAGAA ATGGGCGCCG AGCGTTTTGT ATTAGATGAT
GGTTGGTTTA TTGGCCGTAA CGATGACACA GCAGGGTTAG GAGACTGGTA CGTGGACAAA
GCGTTTTACC CAGAAGGGTT AACGCCTGTT ATTGAGCATG TCAAAGCCCA AGGCTTAGAA
TTTGGCTTGT GGTTCGAGCC AGAAATGGTC AACCCAGATA GTGACCTATA CCGCCAGCAC
CCTGAGTGGG TGTTAGGCAA CGAAGTCAGC AAGCAAATAG ACTGCCGTAA TCAATTGGTG
CTCGATTTAT CTCGCCCAGA AGTATTCGAA TATTTGTTCG AGCGTTTAGA CTCTTTGTTA
TCAGAATATG ATATTAGCTA CGTAAAATGG GACATGAACC GTGATTTGAA CCATCAAGGC
AACCATAGCG GTAAGCCAGG TGGCCATAAT CAAATACATG CGGTGTATCG CTTATTGGAT
AAAATTCGTG AAGCCCATCC GCAAGTGGAA GTTGAAAGCT GTGCATCGGG TGGCGGTCGT
GCTGACTATG GCGTACTGGC GCGCACTGAC CGCGTATGGA CTTCAGATTC TAACGACGCA
CTTGAGCGCC TAAAAATTCA AAATGGTTTC TCGTATTTCT TGCCTTCAGA GCTAATGGGC
TCACACGTAG GCCCAAGAGA GTGTCACATT ACCCACCGCA CTGTTTCAAT GGAAATGCGC
GCTTCAGTGA CCTTGTTCGG CCACATGGGC ATGGAAATGG ATTTACGTGA GCTAACAGAT
GCCGAGAAAG TCGAGCTCAA AGCTATGACC GACTTATACA AACAACATCG AGCATTAGTG
CACAGCGGCG ATTTGTTCCG CTTAGAGCTT CCGGCCTATA TGAATGGGCT AGGTATCGTT
GCCAAAGACA AGTCACAAGC ACTGTTCTCG TACAGTTTAG TAGCATGCAG CTCGGCCACC
CTGCCGGATC AATATAAGTT TGCAGGTTTA GACAAGAACA GCCAATACAA GCTCGATATC
ATTTGGCCAA TAAAGAACAC TGACAAATGG CCAAAATCTG GTCTGTTTGG TTTCGTTAAT
CACCTTGGTG CTGTTGATGG TCAAGTCTTT AGTGGTGAAT TATTGATGCA ATTGGGTATG
CAAATGCCAT TGTTGACGCC ACAAAGCAGT TTGTTGTTCC ATCTTACAAA AGTGTAA
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| Protein sequence | MTQHAAQFIA LHGQKSSLVL DVGYETPQII YWRAKLSEQS TGDMMRALRL RQEAPVSPIV
ELDLCITPTS GQGFTGLPGL SLHGGSDQWA ANPKLKKVTQ NNEYSVTLTS IDAARGVEVV
VTIKLDQDTD VLTFDTALNN ITEQTITLDW CAAATIPTPA DFDQIIGFEG HWAGEFQQHS
LDKFFGSYVR ENRRGKTSHD SYPALLLHPK TTNQAQGEAY GFHLGWSGNH KIVAEKMADG
RSYVQMGELL FPGEIVLSKN QSYQTPTLFA SYTDQGLSAL SQQFHQYVRT HIIRQSVHDK
PRPVHYNTWE GIYFNHDVDT LKDLAERAAE MGAERFVLDD GWFIGRNDDT AGLGDWYVDK
AFYPEGLTPV IEHVKAQGLE FGLWFEPEMV NPDSDLYRQH PEWVLGNEVS KQIDCRNQLV
LDLSRPEVFE YLFERLDSLL SEYDISYVKW DMNRDLNHQG NHSGKPGGHN QIHAVYRLLD
KIREAHPQVE VESCASGGGR ADYGVLARTD RVWTSDSNDA LERLKIQNGF SYFLPSELMG
SHVGPRECHI THRTVSMEMR ASVTLFGHMG MEMDLRELTD AEKVELKAMT DLYKQHRALV
HSGDLFRLEL PAYMNGLGIV AKDKSQALFS YSLVACSSAT LPDQYKFAGL DKNSQYKLDI
IWPIKNTDKW PKSGLFGFVN HLGAVDGQVF SGELLMQLGM QMPLLTPQSS LLFHLTKV
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