| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3595 |
|---|
| Symbol | |
|---|
| ID | 4175375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4329049 |
|---|
| End bp | 4329699 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638056625 |
|---|
| Product | hemolysin III family channel protein |
|---|
| Protein accession | YP_663151 |
|---|
| Protein GI | 109899896 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
|---|
| TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAAC AGGTGCCACC CACAATCCAT CTAAAGCCAT ACACAATAGT GGAGGAGTGG
CTAAATGCGC TCAGCCATGG CATCGGATGT ATCGCGTCTA TCGTCGGCTT GGTGTTCTTA
TTATCTCGCG CCGCTGATAC CTTGGCGCAA GTGGCTGCGA TAATTTATGG AGCATCGATG
ATAGCGATGT TTCTCTCTTC TACTTTGTAT CACGCATTTT CAAACCCCAA AGCGAAGTCC
GTGTTAAAAG TGATTGATCA CAGTGCTATT TACTTATTAA TTGCAGGCAC CTATACACCT
TTTATGTTGC TTGCTGTTGG TGGCTGGGTG GGGGTTATTG GTATCTCGCT CATATGGGCC
TTAGCCGCTA TTGGTGTTGG CTTTAAGTGT TTAGCCGCAG GGCGCTTCCC AAAAATATCA
GTCGCAACCT ATTTATTAAT GGGCTGGTTA GCAGTCTTCT TTATTTATCC TTTGTATATG
TCGCTGCCCA CTGAAGGCCT TTGGCTACTG ATTGCGGGCG GCCTTTGTTA TAGCATTGGG
GTGATATTTT ACGTAGCGAA GAAAATTCGT TATACCCATC CGATATGGCA TGTGTTTGTG
ACGGCTGGGT GTATTTGCCA CTTTTTCTCA ATTTATTATT ACGTGGTGTA G
|
|---|
| Protein sequence | MQQQVPPTIH LKPYTIVEEW LNALSHGIGC IASIVGLVFL LSRAADTLAQ VAAIIYGASM
IAMFLSSTLY HAFSNPKAKS VLKVIDHSAI YLLIAGTYTP FMLLAVGGWV GVIGISLIWA
LAAIGVGFKC LAAGRFPKIS VATYLLMGWL AVFFIYPLYM SLPTEGLWLL IAGGLCYSIG
VIFYVAKKIR YTHPIWHVFV TAGCICHFFS IYYYVV
|
|---|
| |