| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3576 |
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| Symbol | |
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| ID | 4175356 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4299616 |
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| End bp | 4301070 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056606 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_663132 |
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| Protein GI | 109899877 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTGAGT ATGCGTCAGA TAACGTTCTA CCCTCTCGTT GGTATCGTGC TGTCGCGTTT
GTCGCGTTAT GGTTAATTGT TTGGCTGTTA GCACAATTGA TGGAATACAC CGCCCACGCA
AGTGTGTGGT TTCCCGTGTC AGGCTTAACC TACGCAGCTC TATTAATTAT CGGTATCAGG
GCAATTATAC CGCTTATGCT GTGCGCAGTG ATAGTGACCA TACTGACTTG CATCCAGTAT
TCCCTCCCGC TAAATCCCCC CCAGATGATA CAAGCGGGTC TTTTGTTCGG TTTGGCCCAT
ATTTTACCTT ACTGGTTGAG TGCATATCTA TTTGCTTGGG TAGCCCGTCA AGACAAACTC
AGTACACCTG GGCTGATTAT CCTGTATATC ATTCACACCG GCGTAGGGTC ACTTGTTACG
ACTATGTTGG TGATCTTCAG CTTGATTTAC AGCAATATGA TGACTGCGTC TGAAATAGGC
CAAGCATGGT TACCCTTTTG GATCGGTGAT TATGTGGGTG TGTTGGTATT AGCGCCGCTT
TTTGGTGCTT TACTTAGTCG ATATTTCTCA CATGAGCGCT TTGATCTCGA ACAATATCTA
AGCCCGAATC AAACCACAAC CAGCTCCGAG TACCCGCATA AAATTATCGT CGTCACCTTA
CTCGTCATAC TAACCACTAT ACTCAATCAG TACTCAGGTC AACAAGCGAG TGCCTTTGCT
ATTTTCCTGC TCGTGCTGCC GCATATGTGG ATAGCATGCA CGGAAAGCGC ACTGTTCAAC
CTACTCAGCT TAACTTACAG CTGCATTATC ATCGCGCTAT TCGTCAACAT TTTTGGATTA
AATGAATTCG CCTTAATTTA TCAATTTGCC ATTGTGATCG TTGCTTCCAA TGCCCTATTC
GGTATTGCTG TCCCCGCATT GATGGCACAC AACGAAAAAC TGCAAGCTAT CGTCACCACT
GATGCACTGA CCCAAGCTGC GTCGCGTCAA CATTTTATGC AACAAGCTGA ACGAGCAGTA
AATCGCAGCC AAAATGACGA GGTGCCGTTG TCACTTATCA TGTTTGACAT GGATAACTTC
AAAAAAGTAA ATGACACCTT TGGCCATAGT GCTGGCGATA AGGCCTTGCA GAGGGTTTGC
CGGGCGGCGC AACTGTCCCT GCGCCCCACA GACTTACTAG GGCGTTTCGG CGGCGATGAG
TTCGTGGCGC TACTGCCAGA TTCAACCATT AACGATGCTC AGCAAGTAGC ACAGCGGATT
TTGAGCAATG TTAACGCCGC CGAAGTCGCT CCTGGTCAGC CGATAGAATG TAGTTTTGGT
GTGGCACAGC TTAAGCGTAA TCAGAACTTC ACAGAGCTAT TTAACGTAGC CGATAGCGCG
TTGTATAAAG CCAAACAAAG AGGTCGAAAT ACAGTCGTTA ATGAAGATGG AGTGGAACTT
AAATCTGCCA TTTGA
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| Protein sequence | MPEYASDNVL PSRWYRAVAF VALWLIVWLL AQLMEYTAHA SVWFPVSGLT YAALLIIGIR
AIIPLMLCAV IVTILTCIQY SLPLNPPQMI QAGLLFGLAH ILPYWLSAYL FAWVARQDKL
STPGLIILYI IHTGVGSLVT TMLVIFSLIY SNMMTASEIG QAWLPFWIGD YVGVLVLAPL
FGALLSRYFS HERFDLEQYL SPNQTTTSSE YPHKIIVVTL LVILTTILNQ YSGQQASAFA
IFLLVLPHMW IACTESALFN LLSLTYSCII IALFVNIFGL NEFALIYQFA IVIVASNALF
GIAVPALMAH NEKLQAIVTT DALTQAASRQ HFMQQAERAV NRSQNDEVPL SLIMFDMDNF
KKVNDTFGHS AGDKALQRVC RAAQLSLRPT DLLGRFGGDE FVALLPDSTI NDAQQVAQRI
LSNVNAAEVA PGQPIECSFG VAQLKRNQNF TELFNVADSA LYKAKQRGRN TVVNEDGVEL
KSAI
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