| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3565 |
|---|
| Symbol | |
|---|
| ID | 4175345 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 4286964 |
|---|
| End bp | 4288439 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638056595 |
|---|
| Product | 5'-nucleotidase-like |
|---|
| Protein accession | YP_663121 |
|---|
| Protein GI | 109899866 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGACGT GTTTTTCTTA TAAAGTCACC GCTGACGTGC CTAAAAGTGA GAATGTGACA
ATCATCTACG CATCTGACAT GCCGGTTATA GGCTTAAAAC ATGTCGGAGG TTATCCTGAG
CTCTCTAGCG CACTGCAATT GTATCGCAAT CAAAAAGATA CCAGCACGTT TTTTTTATTC
GGTGGCAACA GTCTGGCGCC TAGTCCGCTT TCATCCCTAG ACCGCGGCAC ACATATCATT
GATATTCTTA ATAGCCTAGA GCCCGACGTC ATGTCTGTCA CTAAGCGTGA ATTTAGCTAT
TTTGAAGACG AATTGTCATT ACGCTCCTAC GAAGCGGCTT TTCCACTGAT ATCCAGTAAT
GTTTATGACA AACGCAGTAA AGCCAATGTA GACGGACTAC TCGATTACGT CATAGTCGAG
CAAAAAGGGG TAAAGCTCGG CGTTATTTCT GTGCTAGATG ATAGCGCTAT CACTGACTAT
TTATTAAAGC AGATTGTCAT TCGCGACCCA CAGCAAATCA TTACTGAAAC ATCCAGAACG
TTGCGAGAAA AAGGCGCTGA CATTGTCATC TTAATGTATT CCTACAGCTT TGCGTTTATA
GATCAGCTAT TGAACAAGCA GATTATCGAC ATATCAGTAA CAACAACACC TGAGTCCACG
ATCATACCTG ATGAAGTATT ACCTCAACAT CCTCACGCCG TTGTGTTGAA TTACCTGAAT
CACTTAGCTG AAATAAACTT AAATGTGCAT ACCGGCAAGA AACCTAAGCT CGACATAAGC
TGGGTTAGCA AAAACCTATC GGAATTTTCC AAAGAGCCCA TAGTTGCTGG GCAAGTAAAG
GGCTATACAT CTCGCTTAAA CCGCCTACTC GATCAACCCA TCGCTAACGT TACACAAGCT
TTTCAAACCA AAAGAAGCAG TGTACGCACC GAAGAGAATG CCTTTGCTAA CGCCGTGGCT
GATGCATTGA AATCATTCGC CAATGCCGAT ATGGCACTGC TTAACGGTGG CATCATTCGC
GGAAATCGCT CATACACCAA AGGGCAACAA CTCACACGCC GTGAAATCGC TGAAGAATTA
CCCTTTCGCA GCAAATTGGC TGTATTAACA GTGACGGGTT TGCAGTTAAG AGCTGCGATT
GAAAATGGGT TAAGTGAGAT TGAAAATGTT CGCGGCCGTT TTCCGCAGAT TTCAGGTATT
GAGGTTAAAT ACGATTCAAG TCAAAAAGCA GGGGAACGGG TTGTGTCTAT CACGCTCGAT
GGTAGAGCAA TTGTGCCAAC CCGAGCCTAC AAATTAGCCA CCACAGACTA CATGGCACAG
GGCGGGGATG GCTATCAAGT ACTCAGTGCT TGCCCTCAGA TTACGCTGGG ATATATGGAG
CCGCCAATGG TGGTTGACGT ATTTATGGAA AGCATGAGAA ATAGCAAAGA GTTAGGACCA
AATTTAGATG AGAGACTGGT AGATATTAAT GAGTAA
|
|---|
| Protein sequence | MLTCFSYKVT ADVPKSENVT IIYASDMPVI GLKHVGGYPE LSSALQLYRN QKDTSTFFLF
GGNSLAPSPL SSLDRGTHII DILNSLEPDV MSVTKREFSY FEDELSLRSY EAAFPLISSN
VYDKRSKANV DGLLDYVIVE QKGVKLGVIS VLDDSAITDY LLKQIVIRDP QQIITETSRT
LREKGADIVI LMYSYSFAFI DQLLNKQIID ISVTTTPEST IIPDEVLPQH PHAVVLNYLN
HLAEINLNVH TGKKPKLDIS WVSKNLSEFS KEPIVAGQVK GYTSRLNRLL DQPIANVTQA
FQTKRSSVRT EENAFANAVA DALKSFANAD MALLNGGIIR GNRSYTKGQQ LTRREIAEEL
PFRSKLAVLT VTGLQLRAAI ENGLSEIENV RGRFPQISGI EVKYDSSQKA GERVVSITLD
GRAIVPTRAY KLATTDYMAQ GGDGYQVLSA CPQITLGYME PPMVVDVFME SMRNSKELGP
NLDERLVDIN E
|
|---|
| |