| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3348 |
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| Symbol | |
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| ID | 4175125 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4012349 |
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| End bp | 4013161 |
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| Gene Length | 813 bp |
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| Protein Length | 270 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638056379 |
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| Product | regulatory protein AmpE |
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| Protein accession | YP_662908 |
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| Protein GI | 109899653 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG3725] Membrane protein required for beta-lactamase induction |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTTGA TCAGTTTATT ACTAGTGCTT TTTGTGGAGC GCGTGACGAC TAAATCCAGA
TACTGGCAGG CCGACTTTTA TAGCACTAAA TACTTAGCTG CGTGGCAAAA GCGCGATGGG
TTATCGAGTG ACACTTCATT GCTATTTTTA CTCGTAGCGA TTGTCATTCC CCCTGTGATT
ATTTTTTGTT TTTTGAGCTT TGCCGTTGGT CAGATTATCG CGTTTATCAT CAGCACGACC
ATACTCATGG TGTGCATGGG CTGCCCTAGC GTTCGTGCAA CCTACAAATG CTATTTACAG
GCCGCTAATC GCGGTGACAT GGAAGCGTGT AGCTTATACG AAGACCAAAT CTGTGACCGC
GAACAGATCT CGGCCACATT CGGGCAAAAT TTAGTCTGGC AAAATTATCG ACACTATGCC
GCAGTCATTT TATTCTTTGT ACTGCTTGGT GCACCAGGCG CTGTTTTTTA CGTATTGGCG
CGGGCGGTTC AATCTCAAAT GGCCTTTGAG AATAAAACCG CCAATCAACT CATGCATGTT
CTTGATTGGT TGCCTGTACG CATTACCTCT TTAGGCTTTT TGTTGGTTGG GCATTTCTCT
CGTGCGCTGC CTATTTGGCT GGGACACTTT CTCACGCCGA GCATTTCCGC TAAGAAATTA
CTGGTGGATG TGTCAAGAGC GGCAGAAGAT ATCGAGCCAA ATGAACGCAA TTGCACTGAA
GAGCCTTGTA CTCTCGTCAA GCTAGCAAAA CGAAATATTC TATTCTTAAT GGCCGTTATC
GCTGGATTAA CCCTTGGTGG TTGGCTTAGT TGA
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| Protein sequence | MTLISLLLVL FVERVTTKSR YWQADFYSTK YLAAWQKRDG LSSDTSLLFL LVAIVIPPVI
IFCFLSFAVG QIIAFIISTT ILMVCMGCPS VRATYKCYLQ AANRGDMEAC SLYEDQICDR
EQISATFGQN LVWQNYRHYA AVILFFVLLG APGAVFYVLA RAVQSQMAFE NKTANQLMHV
LDWLPVRITS LGFLLVGHFS RALPIWLGHF LTPSISAKKL LVDVSRAAED IEPNERNCTE
EPCTLVKLAK RNILFLMAVI AGLTLGGWLS
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