| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3297 |
|---|
| Symbol | |
|---|
| ID | 4175074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3957069 |
|---|
| End bp | 3958193 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638056328 |
|---|
| Product | 3-oxoacyl-(acyl carrier protein) synthase III |
|---|
| Protein accession | YP_662857 |
|---|
| Protein GI | 109899602 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0332] 3-oxoacyl-[acyl-carrier-protein] synthase III |
|---|
| TIGRFAM ID | [TIGR00747] 3-oxoacyl-(acyl-carrier-protein) synthase III |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAATT CTGTAGTGAT CAGTGGTTCA GGATTATGGA ATCCACCACA TAGCATCTCA
AACGAAGAGT TAGTAGATGC GTACAATGCG TATGCTCAGC AGTTTAATGA GCAAAATGCC
GATGAGATTG AATCAGGTGC GATAACAGCG AAACCTTTCT CTAGCGCTGA ATTTATTCAA
AAAGCATCCG GTATACGCAG CCGTTATTGC TATATGAAAG ATGGGGTACT GGATATTAAC
CGTATGCGTC CCATCATTCC TGAGCGCGGT GAAGAAGAAT TATCTGATCA GGCCGAAATG
GCGATCAATG CGGCTAAACT GGCCCTTGAA GCGGCAAATA AAACCGCTGA AGATATCGAC
GTAGTGATTG TATCTTGTGC ATATACGCAG CGCTCTTATC CCGCGTTAGC CATCGAAGTG
CAAGGCGCTT TGGGGATCAA AGGTTTTGGT TTTGATATGC TAGTGGCGTG TTCAGCAGCA
ACATTCGCTT TGCATCGTGC TTATGAAATG ATCAGTGCCG GAACGGCAAA AGGGGTATTA
GTGATAAACC CTGAATTGAC TTCACCACAA GTCAATTATT GTGACCGTGA CAGCCACTTT
ATTTTCGGAG ACGTGGCAAC CGCTATGGTA GTGGAGCATG CAGATACCGC GACATCTGAG
CATGTGTTTG ATATTTTAAG TACCAAAGCG ATTACTCAAT ATTCAAATAA TATTCGCTCA
AACTTTGGTT ATGTTAGCCG GGCTAATGAT GTTGACCCCT ATGGAGCAGA TAAGCTGTTT
CATCAAGAAG GACGTAAAGT TTTTAAAGAG GTGTGCCCTA TGGCGGCTGA GCATATTAGC
GAGCACTTAG AGCGACATCA GTTAACCAGT GCTGATGTGA AGCGTTGGTG GTTACACCAA
GCAAACATCA ACATGAACAC GCTTATTAGT AAAAGACTAC TAGGCCGTGA AGCGACTGTT
GAAGAAGCGC CGATTGTATT AGACAGGTAC GCCAATACGG CATCTGCTGG CTCAATCATT
GCGTTCAATC TACACCACAA AGACTTACAG GCCGGGGATT ACGGTTTACT GTGTTCATTT
GGCGCAGGAT ATTCCATCGG CAGTTTGTTA GTCAGAAAAA GGTAA
|
|---|
| Protein sequence | MTNSVVISGS GLWNPPHSIS NEELVDAYNA YAQQFNEQNA DEIESGAITA KPFSSAEFIQ
KASGIRSRYC YMKDGVLDIN RMRPIIPERG EEELSDQAEM AINAAKLALE AANKTAEDID
VVIVSCAYTQ RSYPALAIEV QGALGIKGFG FDMLVACSAA TFALHRAYEM ISAGTAKGVL
VINPELTSPQ VNYCDRDSHF IFGDVATAMV VEHADTATSE HVFDILSTKA ITQYSNNIRS
NFGYVSRAND VDPYGADKLF HQEGRKVFKE VCPMAAEHIS EHLERHQLTS ADVKRWWLHQ
ANINMNTLIS KRLLGREATV EEAPIVLDRY ANTASAGSII AFNLHHKDLQ AGDYGLLCSF
GAGYSIGSLL VRKR
|
|---|
| |