| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2853 |
|---|
| Symbol | |
|---|
| ID | 4174612 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3459320 |
|---|
| End bp | 3460303 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638055867 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_662415 |
|---|
| Protein GI | 109899160 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3569] Topoisomerase IB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.866388 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCGCT TTATTATTCG AAAACCATTT GGTGATAAGT TTACCTACCA GTACCCTTCT
GGCAGAACGG TTAAAAACAA GGGCATTAAG CGCTGGGTGC AAAGCTTAGC GATCCCTCCT
GCGTGGCAGG AGGTGCAAAT TGAACTCGAC CGCAGTGCTA AGGTATTGGC CTTTGGCCGG
GACGCGCAAA ATCGCAAACA ATACATATAC AACCCTAAGT GGACTGAGCA GGCCAGCGAG
CAGAAATTTG AGCGCATTTT GCGCTTTGCC AAAGAGCTTT CCACTATGCG GCGCGTGACA
GGGCAGCATA TCACTCAGCG TCCTATCGAC GAAAATGTGG TATTAGCTTG CATGACACGC
ATGTTAGATG ACGCCTTCTT CAGACCCGGT AACCCAAGTT ACACCAGAGA CAACCAAACT
TATGGCTTGA CCACGCTGCG CGTAAAGCAC ATGAGCATTG AGCGTGGTCA TGTAGAATTT
GATTACGTCG GAAAAAGCCA CAAACAACAG CACCGCGAAA TCCACGACAA TCATGTCACC
AAGGTGTTAG CCCAATTGGA AAAAATGACT GGCTACGAAT TGTTTGATGT CACACTACCG
GATGGGGAGC GTAAAAATAT TAGCGGACAG GATCTAAACC AATACATTGC AGAAGTAATG
GGGGAAGATT TTAGCGCGAA GGACTTTCGA ACATGGGCAG GCACGGTACT GATGGCTATC
GCACTTGACG AACTTGGTCC GGCCGATGAT GAAAAGCTAA GCCAAAGTAA TGTGCTAGCG
GCAGTCAAAA AAGTGGCTGG CGAGCTTGGT AACACGCCAG CAGTATGCCG CTCAAACTAT
ATTCACCCCG GCGTTATCCT GCACTACGAA AGTGGTCGTA CTCTTGATTA TTTTCGCAAA
CAACTCAATC GCACGCGAGC CAAATACTTT AGCCCAGATG AAAAAGCCAC CTTAAAACTG
CTTGAATATC TAGTCGAATC TTAA
|
|---|
| Protein sequence | MERFIIRKPF GDKFTYQYPS GRTVKNKGIK RWVQSLAIPP AWQEVQIELD RSAKVLAFGR
DAQNRKQYIY NPKWTEQASE QKFERILRFA KELSTMRRVT GQHITQRPID ENVVLACMTR
MLDDAFFRPG NPSYTRDNQT YGLTTLRVKH MSIERGHVEF DYVGKSHKQQ HREIHDNHVT
KVLAQLEKMT GYELFDVTLP DGERKNISGQ DLNQYIAEVM GEDFSAKDFR TWAGTVLMAI
ALDELGPADD EKLSQSNVLA AVKKVAGELG NTPAVCRSNY IHPGVILHYE SGRTLDYFRK
QLNRTRAKYF SPDEKATLKL LEYLVES
|
|---|
| |