| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2787 |
|---|
| Symbol | |
|---|
| ID | 4174547 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 3383276 |
|---|
| End bp | 3384610 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638055804 |
|---|
| Product | amidohydrolase |
|---|
| Protein accession | YP_662352 |
|---|
| Protein GI | 109899097 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1473] Metal-dependent amidase/aminoacylase/carboxypeptidase |
|---|
| TIGRFAM ID | [TIGR01891] amidohydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.362917 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAC GCCGCCTTAA TCTAGCCATT GCAGCTATTC CATTTTGTTT CAGCCTGAGT
TTAAGCCAAA GTGCCTATGC TGATAGCGTG AGTGATAAAG TCAGTAGTGA TATGCCCAAA
CTCATGGCGT TATATAAAGA CCTGCATGCG CATCCTGAAT TAAGTGGCTT TGAGGTGAAC
ACCGCAGCAA AATTGGCCAA ACGCGCCAAA GCTTTAGGCT TTGACGTCAC CGAAAAGGTA
GGGGGGACTG GCGTGGTCGC GGTACTGAAA AATGGCCCTG GTCCTGTGGT GATGATCCGC
GCTGATATGG ATGGCCTGCC AGTGATAGAG CAAACAGGAT TGCCCTTTGC CTCAAAGGTG
CGCGCTACCA CAGAAGATGG CATCGAATCT GGCGTTATGC ACGCCTGCGG ACATGATACC
CACATGACCA GTTGGGTCGG CACGGCGCAA GCGCTGACAT CGATGAAAGA TAAATGGTCT
GGTACGTTAG TGATGATTTT GCAACCGGCA GAAGAGCGCG GGAAGGGGGC ACGTGACATG
CTGGCCGATG GGTTATACGA GCGATTCCCG AAACCCGATT ATGCACTCGC ATTTCATGAT
GCTGCGGGTT TACCCGCTGG CACCATAGGT TATACCCCAG AATTTGCCTT GGCCAACGTT
GACAGTGTCG ATGTGATTGT CAAAGGGGCG GGTGGTCACG GCGCTTATCC CCATACCACC
AAAGACCCTA TTGTGTTGGC CAGTCGTATT GTGAGTTCCT TGCAAACGCT GGTGAGTCGA
GAGCTCGACC CACAAGACTC AGCCGTGGTC ACAGTTGGTA GCTTTCATGC TGGTGCTAAG
CACAACATAA TATCTGACAA GGCGACTTTG CTGCTAACGG TACGCAGTTA CTCTGATGAA
ACCCGTCAGG CTTTACTGGA TGGCATCGCG CGTATCGCTA AGGGCGAAGC CATTGCTGCG
GGAATGCCTG AAGCACTCAT GCCAGAGGTG AATATTAAAG ACGAATACAC GCCAGCAACT
TACAACACGC CTGAGTTTAC CCACAAAATG GCTGACGTAT TTACTCAACG TTTCGGCGAA
AAACGCGTTG TTCAAACCCC AGCGGTCATG GGCGGTGAAG ACTTTAGTCG TTTTTATCGT
GCCGATAAGA ACATTCAAAG CCTTATTTTC TGGGTGGGTG GGGTAGAGCA AGGTGACTGG
GACAAAGCCA AAGAAAATGG CACGTCTTTG CCATCATTAC ACAGCCCATA CTGGGCGCCA
GAGGCGGATG CGGTGATTAC AACCGCCACG GAAGCGCTGA CAGCCGCTGC ATTAAATATC
ATGCACAAGA GCTAA
|
|---|
| Protein sequence | MKLRRLNLAI AAIPFCFSLS LSQSAYADSV SDKVSSDMPK LMALYKDLHA HPELSGFEVN
TAAKLAKRAK ALGFDVTEKV GGTGVVAVLK NGPGPVVMIR ADMDGLPVIE QTGLPFASKV
RATTEDGIES GVMHACGHDT HMTSWVGTAQ ALTSMKDKWS GTLVMILQPA EERGKGARDM
LADGLYERFP KPDYALAFHD AAGLPAGTIG YTPEFALANV DSVDVIVKGA GGHGAYPHTT
KDPIVLASRI VSSLQTLVSR ELDPQDSAVV TVGSFHAGAK HNIISDKATL LLTVRSYSDE
TRQALLDGIA RIAKGEAIAA GMPEALMPEV NIKDEYTPAT YNTPEFTHKM ADVFTQRFGE
KRVVQTPAVM GGEDFSRFYR ADKNIQSLIF WVGGVEQGDW DKAKENGTSL PSLHSPYWAP
EADAVITTAT EALTAAALNI MHKS
|
|---|
| |