| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2660 |
|---|
| Symbol | |
|---|
| ID | 4174420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 3239780 |
|---|
| End bp | 3241843 |
|---|
| Gene Length | 2064 bp |
|---|
| Protein Length | 687 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638055679 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_662227 |
|---|
| Protein GI | 109898972 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCTATT CAAAAGATGT TTTACTTTCA GGTTTACCTT TAGTGGACGG GGACCTCACT
CCGTCAATAT TTTCAAGAGC AGCTGAACGA GCAGGTCTTA AATCAAAAAT CGCCACACGC
ACGTTTGAAC AAATTAATCC CTCACTTTTA CCTGCGGTGT TGATCCTTAA TAATAATACG
GCGTGTGTTC TTCTCAGCTT AGACAATGAA AATAAAACAG CTAAGGTTAT CTATCCTGAC
TTACCTGGCG CAGATGTGGA CGAATCAATC GAGTCGTTAT CAAAACGCTT TACGGGTCAA
ATTATTTTTG CCCGCCCCAA ACATCAATTT GATAAACGGG CTCCAACCAT AGAAAAAGAG
ACGACTGGCC ATTGGTTTTG GAGCGTTATA AAGGAATGTA GAGGACTGTA CAGAGATGTC
ATTATCTCCG CGGTAGTGAT CAACTTTTTC TCTATCGCTA TGCCTCTATT TGTTATGAAT
ATATATGACA GAGTTGTGCC TAATGGTGCC ATTGAAACAC TATGGATGCT CGCTTGTGGC
GTCGCGATTG TCTTGGTTGC AGATTTGGTA CTAAAGATGG TGCGAAATTA TTACGTAGAA
CTTGCTGCTA GTCGCATAGA TGTGAAAGTC TCTTCTTCGC TTATGGAAAA AATTCTTAAC
ATTCGGTTGA TGGAACGGCC CCCGTCGTCT GGTGCATTCG CCAGTGGTAT TCAATCTTTT
GAATCTATTC GAACCTTACT CAGTTCCCTA ACCTTGGTTT CCTTTGTAGA TTTACCGTTT
GTACTGTTAT TTAGTGTCAT CATCGCGATT ATCTCCCCAA TACTGATACT GCCGATTATT
GTTGGTTCAC TTGTGATCCT AGGCTATGCA TTTTCAGCGC AAAAGAAACT GCATAGTTTA
TCTACTGGTG CAATGCAATC AGGGGCTCTG CGAAACGCTA TTTTAGTAGA AAGTATCGAT
AATATAGAGG AAATCAAAAG CTTTCATGCT GAGTCAAAAG TGCAAGTCGA CTGGGAGAAA
AGCACAATAT TTCTTGCGCG AACTCAATCG CAAATTCGTT TTATTTCCTC TTCAATCAGT
AACGTGTCGC AGTTTATTCA ACAACTAGTC GGAATTGTCA TCTTGATTAT TGGCGTGTAT
TTAATTATCG AGAGAGAACT CTCCCAAGGC GCGCTTATCG CCGCTTACAT GCTAAGCAGC
CGGGCAATGA ACCCGATCAA CCTTGTCGCT GGGGTCATTG CCCAATATCA CAATGCTGCT
ACCTCAATGG AAGTGCTCAA CGCGTTAATG AAACAACCTT CTGAGCGACC TGTTAACACG
CACAAAATTC ATCACCCAAC GTTTAAAGGC GAAATAGAAT TTAAAAATGT CTCCTTCCGT
TACGACGATG ACTCGAAAGA TGTGTTGTCT GATGTGAGCT TCAAAATCAA TGCAGGAGAT
CATGTAGCGA TTTTAGGTAA AAATGGTTCA GGTAAAAGCA CTATTCAAAA ACTCCTGCTG
GGTCTATACA CGCCAACTTC AGGCCACATA TACATAGACG GTATAGAGTT ACAGCAATTA
GAATTAACCG AATTGCGTAA TAATGTAGGT TATGTGCCGC AAGAAATATC CCTGTTCTTT
GGAACACTTA GGGACAATAT TATGTATTTA GCCAAACATA CCGAGCCACA AGCCCTCAAC
CGTGCCCTAG AACTCAGTGG GTTAATGTCG GTGGTTAACA ACCATCCCGA CGGTTTAAAT
ATGCAGGTTG GTGAACATGG CCATCACTTA TCTGGGGGAC AAAAGCAGGC CGTTGCCATC
GCCAGAGCGA TTGTAGCAAA TCCGCCGCTT TTACTTCTGG ACGAACCCAC ATCCTCCTTG
GATCATCAAG CTGAAGATCA CGTTAAACAT GCGCTAGAAA ATGTCAGTAA GGGGCGCAGC
ATGGTTATGG TTACGCACCG TATGTCCTTA CTCTCGATGG TTAATCAAAT CATCGTGTTA
GATTCAGGTA AGTTGGTAAT GAAAGGCAAA AAAGAGCAAG TACTTGACGC CCTGAAAAAG
GGTAAAGCGA AGGCAGCATC ATGA
|
|---|
| Protein sequence | MIYSKDVLLS GLPLVDGDLT PSIFSRAAER AGLKSKIATR TFEQINPSLL PAVLILNNNT
ACVLLSLDNE NKTAKVIYPD LPGADVDESI ESLSKRFTGQ IIFARPKHQF DKRAPTIEKE
TTGHWFWSVI KECRGLYRDV IISAVVINFF SIAMPLFVMN IYDRVVPNGA IETLWMLACG
VAIVLVADLV LKMVRNYYVE LAASRIDVKV SSSLMEKILN IRLMERPPSS GAFASGIQSF
ESIRTLLSSL TLVSFVDLPF VLLFSVIIAI ISPILILPII VGSLVILGYA FSAQKKLHSL
STGAMQSGAL RNAILVESID NIEEIKSFHA ESKVQVDWEK STIFLARTQS QIRFISSSIS
NVSQFIQQLV GIVILIIGVY LIIERELSQG ALIAAYMLSS RAMNPINLVA GVIAQYHNAA
TSMEVLNALM KQPSERPVNT HKIHHPTFKG EIEFKNVSFR YDDDSKDVLS DVSFKINAGD
HVAILGKNGS GKSTIQKLLL GLYTPTSGHI YIDGIELQQL ELTELRNNVG YVPQEISLFF
GTLRDNIMYL AKHTEPQALN RALELSGLMS VVNNHPDGLN MQVGEHGHHL SGGQKQAVAI
ARAIVANPPL LLLDEPTSSL DHQAEDHVKH ALENVSKGRS MVMVTHRMSL LSMVNQIIVL
DSGKLVMKGK KEQVLDALKK GKAKAAS
|
|---|
| |