Gene Patl_2596 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_2596 
Symbol 
ID4174356 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand- 
Start bp3153601 
End bp3154614 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content47% 
IMG OID638055617 
Productglyceraldehyde-3-phosphate dehydrogenase, type I 
Protein accessionYP_662165 
Protein GI109898910 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTATCA ATATTGCGAT AAATGGTTTC GGACGTATAG GGCGCATGGT CACGCGAGCT 
CTTTATGAAT CTGAACGAGC AGATGAACTG CGCATCGTAG CGATAAACGA CCTAGGTGAT 
GCAAGCACCA ATGCGCTATT GCTAAAACAT GATACAGCGC ACGGAACCTT CCAAACAGAG 
GTACGTGTTG ATGGTGATAA CATCATTATC GGCAATGACG AGGTGCGAGT GTTTAAAGAG 
CGAGATCCAT CGAAATTACC CTGGAGCGAG TTGAATGTAG ACATCGTTTT AGAATGCACT 
GGCTTATTTC GCACCAGAGA AACGGCACAA ATGCACATTG ATGCGGGTGC AAAGAAAGTG 
CTATTGGCCG CTCCGGCAAG AGACAGCATT GATGCAACAA TCGTATTTGG CGTTAACGAC 
GACACGCTGT TGGCTGAGCA TACAATCGTA TCGAACGCAT CATGCACCAC CAATTGCTTA 
GCACCATTAG TAAAGCCACT GCACGAGGCG ATTGGCATAG AAAGCGGCAC GATGACCACC 
ATCCACGCCT ACACAAATGA TCAAGTGCTC ACCGATGTAT ATCACAAGGA TATTCGTCGG 
GCGCGCTCTG CAACGATGTC GATGATCCCC ACTAAAACCG GAGCTGCTAC GGCAGTGGGC 
CTTGTGCTAC CCGCATTAGA TGGCAAACTC AAAGGCTTCG CGGTTCGCGT TCCTGTCATT 
AATGTATCCA TGGTGGATTT AACGTTTATC GCCAGTCGTG CTACCACTAT TGACGAAATC 
CACTCTATTA TGCGCACGGC AAGTAATGGG GCGCTAAAAG GGGTACTTGA ATATTGTGAT 
GAATTACTGG TATCTACTGA TTTCAACCAT AATTCAGCGT CTTCCATTTT TGATGCGAGC 
TTAACCAATG TGATAGACGG AAAACTGGTT AAGGTGTGTG CTTGGTATGA TAACGAATGG 
GGATTTTCTA ACCGGATGTT AGATACCGCT CTCGCCTTAG CCAAGGCATC TTGA
 
Protein sequence
MAINIAINGF GRIGRMVTRA LYESERADEL RIVAINDLGD ASTNALLLKH DTAHGTFQTE 
VRVDGDNIII GNDEVRVFKE RDPSKLPWSE LNVDIVLECT GLFRTRETAQ MHIDAGAKKV 
LLAAPARDSI DATIVFGVND DTLLAEHTIV SNASCTTNCL APLVKPLHEA IGIESGTMTT 
IHAYTNDQVL TDVYHKDIRR ARSATMSMIP TKTGAATAVG LVLPALDGKL KGFAVRVPVI 
NVSMVDLTFI ASRATTIDEI HSIMRTASNG ALKGVLEYCD ELLVSTDFNH NSASSIFDAS 
LTNVIDGKLV KVCAWYDNEW GFSNRMLDTA LALAKAS