| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2581 |
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| Symbol | |
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| ID | 4174341 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3128554 |
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| End bp | 3130200 |
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| Gene Length | 1647 bp |
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| Protein Length | 548 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638055602 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_662150 |
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| Protein GI | 109898895 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGCAAAA TCACGCGCAG TATTCGCTTC ACTGGTTTTC AAATGCGCCT GCTATTGGTT
ATCGTTTTAG GGGCCAGTGT ATTCTCAATA GGTGCAAGTG TTGCGGCTTA CTATTTAGGG
CAGCAAAAAG CGATTGAGAC GAGTCTGGCG AGTTTGAATG ATTTGACGCA AGCGGTTGAA
AAAACCGTTG CTATAGGCGC TTACGCGTCA GACCTTGTGC TACTTGAAGA GGTCGTTGAA
GGATTGGCCC GAAATTCTCT TGTTGCCCGT GTGGAAGTCT ACTCCAATAA CGGTCAAATT
TTGCTGCAAT CCGCTGAGGT TGAATCTGCC GCTAACATCG ATTCGCTGCC AGCCAGATCA
CCCTACATTG AGCGAGCACT TTATTCACCC TTTGACGCTG AGGAGCGTAT TGGTGCAATA
CGGATCTTTG CACAACCCGC ACATATCGCT GCCGCGTCAA GAAAAGAGGC AATGACGTTA
ACGGTGATGA TGATAATTCA AGCATCAGTG CTCGCGTTGT TGCTTTACGC TGTAGTGACG
TTTTTAATAT CTCGGCCAAT CACCCAACTT GCCATATCGT TACGTGCTAT GCGTCCTGGT
ACACATGAGC GCCTAGATAT TCCTGCTCTT CATAAGCGCG ATGAAGTGGG TATGTTAATG
AGCAGCGCAA ACGCGTTGCT AGATTCAAAT GCGCAAGCGC TGGAACGAGA AAGGGAGCTT
AGAGCTGATG TTGAAGCGTT AGAAACGCAA TATCGTCAAA TTTTCGATTC AAGCAGTGCG
GGCATTTTTG TATTAGACGG AAACGGTAAA CTGGTAAATA GCAATCCAAC GGTAGCAAAG
GTCATTGGTG TGCCGCTTTT TAGATTATTG GAATTGCAAA ATGAGGATTT TGTTAAGCAG
GTTTTTCACC ACGCTGAAGA ACTGCAAGCG ATGCAAAAAG AAGCGACTGA AACCGGAGAA
ACGGTTTCCA AAGATCTTGA ACTCATTCCT CGCAGTGGGA GGAGGCGTTG GGTGCACTGC
CTTATTTCAG TTCATCAAGC CGCGTGGCGC AAAGACAATG TAGCGAGTCA AATAACAGAG
GGCGTTATAT ACGATATCAC TGAGCGTAAA CGCGCTGAGA CAGCTGCGCT ATTCAAAGCA
GAACACGACG CTCTCACTGG GCTTAAAAAT CGAGCTGCTA GTTACGAGTT AATTGAACGT
TTTCTAATGG AAAGTACACA GGAAAGTACT CCCCTTAGTA TATTGGGTAT CGATTTAGAC
GGATTTAAAC AAATTAATGA TAAATATGGT CATGAAGCAG GGGACAATGT ATTGATCGCC
TGCGCTCAAC GAATGCAAGA TGCTGTAAGG CGTTCCTCCG ATATGGTTGG CCGGCTTGGA
GGAGATGAAT TTGTTGTGGT AATGCAAAAC ATTGGGCCGA CGGATAAAAC GTTATACATA
ACAGCAGATG CACTACTTGT AGCACTCGCA AAGCCCATAG AAATAAGAAA CGGAATAAAT
GTCAGTATAG GAGCAAGCAT AGGCATTGCC TGTGCTCCAC TTCACGGAAA TAAACGAAAA
GGGCTTCTGG ATATGGCTGA TGCGGCCATG TACGAGGTTA AGCGAACAGG AAAAAACACC
TATGCGATGG CAAAGTTAAA CCATTAA
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| Protein sequence | MSKITRSIRF TGFQMRLLLV IVLGASVFSI GASVAAYYLG QQKAIETSLA SLNDLTQAVE
KTVAIGAYAS DLVLLEEVVE GLARNSLVAR VEVYSNNGQI LLQSAEVESA ANIDSLPARS
PYIERALYSP FDAEERIGAI RIFAQPAHIA AASRKEAMTL TVMMIIQASV LALLLYAVVT
FLISRPITQL AISLRAMRPG THERLDIPAL HKRDEVGMLM SSANALLDSN AQALEREREL
RADVEALETQ YRQIFDSSSA GIFVLDGNGK LVNSNPTVAK VIGVPLFRLL ELQNEDFVKQ
VFHHAEELQA MQKEATETGE TVSKDLELIP RSGRRRWVHC LISVHQAAWR KDNVASQITE
GVIYDITERK RAETAALFKA EHDALTGLKN RAASYELIER FLMESTQEST PLSILGIDLD
GFKQINDKYG HEAGDNVLIA CAQRMQDAVR RSSDMVGRLG GDEFVVVMQN IGPTDKTLYI
TADALLVALA KPIEIRNGIN VSIGASIGIA CAPLHGNKRK GLLDMADAAM YEVKRTGKNT
YAMAKLNH
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