| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2396 |
|---|
| Symbol | |
|---|
| ID | 4174144 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 2915504 |
|---|
| End bp | 2916571 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638055407 |
|---|
| Product | sodium/hydrogen exchanger |
|---|
| Protein accession | YP_661966 |
|---|
| Protein GI | 109898711 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0475] Kef-type K+ transport systems, membrane components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATTTTG ACCCTATTCT GCCCGCAGTG GTGGGAACCA CTTTGATTGG ACTATTTCTT
TCACTTGCCT TTAGGTATTT CAAGCTCCCT CTTGTTTTGG CCTATATTGT GACGGGGCTG
ATTGTTGGCC CCCAATGTTT AGGCCTAATT AACGACATTA ATGTGATTGA GACCATGGGC
TCGTTCGGCG TCATACTGCT GCTTTTTTTC ATCGGTATGG AGGTGAGCCC TGATAAGTTA
CGGCGTAGTT GGCGGGTGTC TATTGGCAGC ACAGGATTAC AAATTGTTCT GTGTGTGGCA
TGCGTATACT TGGTCGGTAG TCTGCTTGAT TGGTCGCTGC AGCGTATCGT GTTATTGGGC
TTTGTGCTGA GTTTGAGTAG TACGGCTGTG GTGCTTAAAT TGATGCAAGA CAGCAACGAG
TTGCATAGTG AGCAAGGTCA GCATGTGTTA GGCGTGTTAC TGGTGCAAGA TTTGGCTGTG
ATCCCCATGG TCATTGTGAT TGGCATGATG GATGAAACCG GGGTGCAGTC CGATGTGATC
GCCATGCAGG TTGGGGCGGG CATAGGTGTG TTGTTACTAG TACGTTGGTT GCTGAATCAA
GAATACATTG AATTCACGTG GTTGAATAAG CTTAAGGTGA ACCACGAACT TCAAGTTTTT
GGCGCGCTTT TATGTTGTTT TGGCTTAGCC TTGTTGTCTG GGTTGATGCA TTTATCGACT
GCACTAGGTG CCTTTGTTGG CGGCATGCTG GTGGCGAAAA TGAAAGATTC GATGTGGATC
AGAAGCAGCT TACAAGCCTT TCATGTGGTG TTTATTGCGT TATTTTTTAT GTCTATCGGC
ATGTTGCTAA ACGTGCAGTT TATCGTGCAA AACAGCACCT TATTAATCTC ATTGCTGCTC
ATGGTGCTGG TGGGTAATAC CTTGATAGCG ACTTTCACAC TGCGCTTATT GCACGTCAGT
TGGACAAAAA GCCTTTATGC TGCGGCGATG CTTGCTCAAG TTGGGGAGTT CAGCTTTATA
TTGGCTACGC TTGGCCGCCA ATCAAAGCTT ATCAGTGATT ATGGTTAA
|
|---|
| Protein sequence | MHFDPILPAV VGTTLIGLFL SLAFRYFKLP LVLAYIVTGL IVGPQCLGLI NDINVIETMG
SFGVILLLFF IGMEVSPDKL RRSWRVSIGS TGLQIVLCVA CVYLVGSLLD WSLQRIVLLG
FVLSLSSTAV VLKLMQDSNE LHSEQGQHVL GVLLVQDLAV IPMVIVIGMM DETGVQSDVI
AMQVGAGIGV LLLVRWLLNQ EYIEFTWLNK LKVNHELQVF GALLCCFGLA LLSGLMHLST
ALGAFVGGML VAKMKDSMWI RSSLQAFHVV FIALFFMSIG MLLNVQFIVQ NSTLLISLLL
MVLVGNTLIA TFTLRLLHVS WTKSLYAAAM LAQVGEFSFI LATLGRQSKL ISDYG
|
|---|
| |