Gene Patl_2230 details

Gene Information

• Locus tag: Patl_2230
• ID: 4172382
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 2697998
• End bp: 2701468
• Gene Length: 3471 bp
• Protein Length: 1156 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 638055238
• Product: acriflavin resistance protein
• Protein accession: YP_661802
• Protein GI: 109898547
• COG category: [V] Defense mechanisms
• COG ID: [COG0841] Cation/multidrug efflux pump

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATATTG TTGATATAGC AGTTAAGCGC CCGGTCGCGG TGTGGATGTT CACCTTTGCC 
ATTGTGTTAT TTGGCATGGT GTCGCTGTCA CGCTTACCCA TTAACCTATT ACCTGAATTA 
TCCTACCCTA CCCTGACTAT TCGTACCGAT TATGTAGGGG CAGCACCTGG CGAAATCGAA 
CAGCTTGTCT CTAAGCCTAT TGAGGAAACC ATTGGCGTTG TTAAAGGCGT GCGTAAGGTC 
ACGTCTTCAT CTACCTCTGG GCAGTCCGAT GTGCTGCTGG AGTTTGAATG GGGCACTGAC 
ATGGACATGG CAAGTCTAGA GGTACGTGAA AAGCTCGATA CCTTAATTTT ACCTTTAGAC 
GTTGAAAAGC CTGTGTTGCT GCGTTTCAAC CCAAGTTTAG ATCCCGTCAT GCGCCTCGGT 
TTCGGTATTG GCAGCACCAG TAATACCGGA AAAAACGTTG ACGTCACTCA AAGCGCCGCG 
CTTGATGTAA CTAGCATGAA ACGACTGCGG GAGTACGCAG AGCAACAAAT TAAGCGTAAG 
TTAGAATCCA TCAGCGGTGT AGCGTCGATC AAAATAGGCG GCGGCTTAGA AAGCGAAATT 
CACGTATTGG TTGATCAACA AAAGGCCAGT CAATTAGCCA TCCCCATGAG CGACATCATC 
AAACGCTTAA AAGAAGAAAA CGTTAATGCT GCAGGCGGGC GTGTCGACGA TGGCTCTCAA 
GCTTACACCG TACGCACCCT TAATCAGTTC ACTAGCATAC AAGATATGCA AAATGTGTTT 
GTTGCTCGAC GTGACAACAA AAATATCCGC TTAGGTGATA TTGCTGTTAT TCAAGATGCT 
TATAAAGAGC GGAATTCAAT TACACGGTTC GACGGGTTAG AAGGAGTCGA AATTGCCATT 
TACAAAGAAG GGGATGCTAA TACAGTACAA GTTGCGCAAA ATGTAAATGC AGAACTGCGT 
CAACTAGAAA GCGCATTACC GGCTAACTAC AAAATACAGC TGATTTACGA CCAGTCAGTA 
TTCATTGCTA ATGCCATCGA CGATGTAAAA TCTGCAGGCA TAATAGGTGG CGTGCTGGCG 
ATGGTGGTGT TGTATTTATT TCTACGTAAT GTTTGGCCCA CCCTCATCAT TTCTCTTTCT 
ATTCCTGTGT CTATCATTGC CACGTTCAAC CTTATGTATG GCAACAACAT CAGCTTGAAC 
ATCATGAGTT TGGGCGGTAT TGCGTTGGCC ATCGGCCTAT TGGTCGATAA CGCCATTGTC 
GTGCTTGAAA ACATAGAGCG GCACAAGCAA ACACAAAGCG ATGTTAAACA GGCGGCAGCA 
CAAGGAACGA AACAGGTATC CATGGCGATC ATCGCCTCTA CCCTTACCAC CATGGCGGTA 
TTCTTTCCTT TGGTATTTGT TAAAGGTATC GCCGGTCAAT TGTTTGCCGA TCAAGCCCTG 
ACCGTTACCT TTGCGTTAGG AGCCTCTTTG CTTGTTGCGT TAACCGTTAT TCCTATGTTG 
GCGGCACAAG CGCGCTCGAA ACCCGCTCAT GGCGACACGT CCCTAGGTGT AACGGACAGC 
GCTAACACGC ATCAGCAACC CCCACGCCCG TTAACAAACC CCTTTTATGA CACCATTGAC 
TTGTCTGGTG CAGGTTTTGA CTCTGACTTT GACCCTAGCC TTAATAACAG CTCTGGTGGT 
CAGGCTGGTG TTAAAAGTGG CGGCGAACCA AGTGTCACTA AACGGATCTT CGCCACTCTC 
GCGCTGCCTT TTGTGTGGTT ATCCCGTGGG GTGTTTCATT ACCTACCCCT TATTTTATCT 
ACAGCAGTAC TCATCGTATT TAGAGCGTTA GCTAAGCTTT TAGGCTTTAT TTTCAAACCG 
CTGCTTTGGC TATTTGAAAA AGCCCTCAAT TCCGTGTCTT TCTATTACGC ACGCTTACTA 
AAACTCGCAT TGCGGGCACC CGCGTTGCTG CTGGTTGGCA TAGTGGCAAT AGCCGCCAGC 
TCATTAATGT TTATTCCGCG GCTCGGTATG GAGCTCATCC CGAGTATGTC TCAGGGGGAA 
TTCTACGTTG AAGTCACGTT ACCAAGCGGC ACATTGCTCA GCTATACCGA TAATACCTTA 
TCCGCATTGT CCGCCTTTAC CGAGGCGCAG GACGGCGTAA AACGCACTTA TTCATTGGCC 
GGCACTGGCA GTTTAATGAA CGCGTCAGCC AGACAGGGCG GCGAAAACTG GGGCAAATTA 
AATGTTGTGA TGCAAAGCGA TGCAACAAGT GAGCAACTAA AAAGCCTACA ACAGAAAATG 
CGAGACTACT TACGAAGACA AGCTGGGGTG CAGGCAGAGT TTGGCCAACC TGAATTGTTT 
AGCTTTGCAG CTCCGTTATC TATCGATTTA GTTGGCTACA ACCTCACTAG CTTGGCTAAA 
TACAGCGCAA TCTTAGTAGA CGCCCTACAA CAAGACTCGC GTTTTAGCGA TGTCACCAGC 
TCCCTGCAGC GAGGCACACC AGAGCTTAAA ATCACCTTTG ATCACGCAAA ACTTGCTCAA 
CTAGGCTTAA GTGCACCCCA GGTATCCACA CTGATAAACG CCAAAGTCGG TGGTGAAGTG 
GCAAGCCAGT TCAATTTAGA TGATCGCAAA ATTGATATTC TGGTTCGCAG CCTCAACACG 
CAGCGTGATT CAATTGAGGA TATAGGGCGC ATTATAGTGA ATCCTGGGGC ACAGCGAGCC 
ATTGCTTTAA ATGCCGTAGC GGACTTGAGC ATGTCTATTG GACCAAGTGA AATTACCCGC 
ATCGGGCAAG AACGCGTCGC GGTGATATCT GCCAATCTCG CCTATGGTGA TTTAGCCCAA 
GCTGTTGAGA TGGCTAATCA ACATATTAAA GACATGAACT TACCGTATTC GCTGCAAGCA 
CGAGTGGCCG GTCAAAGCGA AGAGATGAAA ACCAGTTTCG CGTCTTTGAA GTTTGCTCTG 
GCACTGGCTG TCTTCTTAGT GTATCTGGTC ATGGCATCTC AATTTGAGTC GCTGTTGCAT 
CCACTATTGA TACTGCTCAC TGTGCCGCTG GCATGTGCAG GCTCCATATT CGGCTTGTTT 
ATCACTCAAA CGAACATCAG CGTGGTGGTG TTTATTGGTC TTATCATGTT GGCAGGTATT 
GTGGTGAATA ATGCGATTGT GCTTATTGAC CGCATTAATC AGTTGAGGAC AGAGGGCGTA 
ATAAAGACAC AGGCCATTAT CGAGGCCGCC CACAATCGAC TTCGTCCTAT ATTGATGACA 
ACCTTAACCA CTTCCCTAGG GTTACTGCCG ATGGCGCTTG GGCTTGGCGA AGGTGCTGAG 
ATGCGCATTC CTATGGCAGT CACCGTGATA TTTGGCTTGC TGTTCGCAAC GCTGCTCACC 
TTGTTCTTTA TTCCGTGTTT ATATGCCCTG TTTGATCGCA AATCAGATGC ATTAATGGCG 
CAAAATGCGC AACCGACGAG CATGACAAAC AAGGCGCTAG GTTATGAATA A 

 

Protein sequence

MNIVDIAVKR PVAVWMFTFA IVLFGMVSLS RLPINLLPEL SYPTLTIRTD YVGAAPGEIE 
QLVSKPIEET IGVVKGVRKV TSSSTSGQSD VLLEFEWGTD MDMASLEVRE KLDTLILPLD 
VEKPVLLRFN PSLDPVMRLG FGIGSTSNTG KNVDVTQSAA LDVTSMKRLR EYAEQQIKRK 
LESISGVASI KIGGGLESEI HVLVDQQKAS QLAIPMSDII KRLKEENVNA AGGRVDDGSQ 
AYTVRTLNQF TSIQDMQNVF VARRDNKNIR LGDIAVIQDA YKERNSITRF DGLEGVEIAI 
YKEGDANTVQ VAQNVNAELR QLESALPANY KIQLIYDQSV FIANAIDDVK SAGIIGGVLA 
MVVLYLFLRN VWPTLIISLS IPVSIIATFN LMYGNNISLN IMSLGGIALA IGLLVDNAIV 
VLENIERHKQ TQSDVKQAAA QGTKQVSMAI IASTLTTMAV FFPLVFVKGI AGQLFADQAL 
TVTFALGASL LVALTVIPML AAQARSKPAH GDTSLGVTDS ANTHQQPPRP LTNPFYDTID 
LSGAGFDSDF DPSLNNSSGG QAGVKSGGEP SVTKRIFATL ALPFVWLSRG VFHYLPLILS 
TAVLIVFRAL AKLLGFIFKP LLWLFEKALN SVSFYYARLL KLALRAPALL LVGIVAIAAS 
SLMFIPRLGM ELIPSMSQGE FYVEVTLPSG TLLSYTDNTL SALSAFTEAQ DGVKRTYSLA 
GTGSLMNASA RQGGENWGKL NVVMQSDATS EQLKSLQQKM RDYLRRQAGV QAEFGQPELF 
SFAAPLSIDL VGYNLTSLAK YSAILVDALQ QDSRFSDVTS SLQRGTPELK ITFDHAKLAQ 
LGLSAPQVST LINAKVGGEV ASQFNLDDRK IDILVRSLNT QRDSIEDIGR IIVNPGAQRA 
IALNAVADLS MSIGPSEITR IGQERVAVIS ANLAYGDLAQ AVEMANQHIK DMNLPYSLQA 
RVAGQSEEMK TSFASLKFAL ALAVFLVYLV MASQFESLLH PLLILLTVPL ACAGSIFGLF 
ITQTNISVVV FIGLIMLAGI VVNNAIVLID RINQLRTEGV IKTQAIIEAA HNRLRPILMT 
TLTTSLGLLP MALGLGEGAE MRIPMAVTVI FGLLFATLLT LFFIPCLYAL FDRKSDALMA 
QNAQPTSMTN KALGYE