| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2187 |
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| Symbol | |
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| ID | 4172339 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2643750 |
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| End bp | 2645258 |
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| Gene Length | 1509 bp |
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| Protein Length | 502 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638055195 |
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| Product | major facilitator transporter |
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| Protein accession | YP_661759 |
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| Protein GI | 109898504 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2211] Na+/melibiose symporter and related transporters |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGCAAA CTAAACCACA ATTAAGCTTT TGGCAGATTT GGAACATGTG CTTTGGCTTC
CTCGGTATTC AATTTGGTTT TGCCTTGCAA AATTCTAATG TCAGTCGAAT ATTTGAGTCC
CTTGGTGCTG ATTACAGTAA TTTGGCGGTC TTGTGGGTAG CCGCGCCTAT TACTGGCTTA
GTGGTTCAGC CGATTATTGG CTATTTGAGT GACAATACTT GGAATCGTTT AGGCAGAAGA
CGACCGTATT TTCTTTGGGG CGCTATTGCC GCAAGTGGTG CGTTGTTCAT AATGCCAAAT
TCACCTACCT TGTGGTTTGC TGCAGGTATG CTGTGGATCA TGGACGCCTC AATTAATGTT
TCAATGGAAC CGTTTCGGGC GTTCGTGGGT GATATGTTGC CCCCTAAACA ACGTGCCAGC
GGCTATGCCA TGCAAACCTT CTTTATTGGT GTTGGTGCTG TGGTGGCGTC TGCTTTGCCT
TGGATGATGA CGAACTGGTT TGATGTTTCG AATATTGCTG CACCTGGCAC CGTTGCCGAT
TCTGTTAAAT TCTCGTTTTA TGCTGGCGGC AGTATCTTCC TGTTTGCGGT TTTATGGACG
GTCATTTCAA CCAAAGAGTA CTCCCCGGAG CAATTAGCTG CGTTTGATGC TGCTCAAGCG
GAGAAAGACA AACAATCTCT CACTATTACG CACACTAGAA CAGCAGGGCA GTACATTAAG
GGAGGCAGTC TTTTTTGTGT TATTGGGTTA GCCTTACTTG TACTGATTTA CCTCAACATC
GACCAACTTG ATAAAAATTT ATATATTTTG GCCGGCGGGC TGATTGCTTT TGGCATTTGT
CAGTTAGTTG GGGCCTCTAT GGTGCACCAA AAACGCACCA AAAATGGTTT CGCGCAAGTC
CTTGGCGATC TATTTGCTAT GCCCCAAGCC ATGCGTCAGT TGGCAGTAGT GCAGTTTTTC
TCATGGTTTC CTTTGTTCGC GATGTGGATT TATACCAATT CAGCCGTCAC ATCTCATCAT
TATGCCAGTC GAGATACCAG CTCAATTGCG TACAATGAAG GTGCCGATTG GGTGTCAATC
CTGATGGCGA CCTATAATGG CGTGTCTATT TTCGCTGCCA TTGTCATTCC TTTTGTCGTT
CGTAAACTCA ATTTGCAATA TGCACATTTA ATCAATCTAT CGTTGGGAGG CATTGGCTTT
ATTTCCTTTT GGTTTATTCG CGACCCTGCT TGGCTTGTCT TAGCAATGGT CGGTGTCGGA
TTTGCTTGGG CGTCGATTCT TTCAGTACCT TACGCCATCT TAGCCAACGT GTTACCCAGC
AACAAAATGG GGGTATACAT GGGAATTTTT AATTTCTTTA TTGTTATTCC ACAAATCCTT
GCTGCCAGTA TCTTAGGTTT TTTGATCACT AAGGTGTTCG ATAATCAGCC TATATTCGCG
CTTGTGATAG GCGGTTGTAG CATGTTGATA GCGGGCGTGA TGACGTTACG TGTGAAAATT
CCTCAATAA
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| Protein sequence | MQQTKPQLSF WQIWNMCFGF LGIQFGFALQ NSNVSRIFES LGADYSNLAV LWVAAPITGL
VVQPIIGYLS DNTWNRLGRR RPYFLWGAIA ASGALFIMPN SPTLWFAAGM LWIMDASINV
SMEPFRAFVG DMLPPKQRAS GYAMQTFFIG VGAVVASALP WMMTNWFDVS NIAAPGTVAD
SVKFSFYAGG SIFLFAVLWT VISTKEYSPE QLAAFDAAQA EKDKQSLTIT HTRTAGQYIK
GGSLFCVIGL ALLVLIYLNI DQLDKNLYIL AGGLIAFGIC QLVGASMVHQ KRTKNGFAQV
LGDLFAMPQA MRQLAVVQFF SWFPLFAMWI YTNSAVTSHH YASRDTSSIA YNEGADWVSI
LMATYNGVSI FAAIVIPFVV RKLNLQYAHL INLSLGGIGF ISFWFIRDPA WLVLAMVGVG
FAWASILSVP YAILANVLPS NKMGVYMGIF NFFIVIPQIL AASILGFLIT KVFDNQPIFA
LVIGGCSMLI AGVMTLRVKI PQ
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