| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2113 |
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| Symbol | |
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| ID | 4173792 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2561287 |
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| End bp | 2563059 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638055121 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_661685 |
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| Protein GI | 109898430 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | [TIGR02402] malto-oligosyltrehalose trehalohydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAAAAG AACGCATTGC ATCCATGGGA TTATTCAAAT CAGATAAAGG CTATGAAGTC
GCGCTATGGG CGCCCAATGC CAAAGCCGTA GCTATCCGCG GTGAGTTTGA TGATTGGAGT
GAGAAGGGCG TTGCTCTTAC GCTTGAAAAT GATGGTGTAT GGACTGGTCA AATTCCCCAG
TTAAAGAATC ATCAAAAATA CCAATTTAGT ATTACCACGC AATCTGGTGA TGTGCTAAAA
CGCAACGACC CTAGAGCGCG ATTACTAACG AACAGTGTGG GCGCATCAGT CGTTTATGAT
GACGATTACC AGTGGCCCGA ATCCCCCTTT CAAATGCCAG AAAGAAGCGC TCTTGTTATT
TATGAACTCC ACATAGGGAC GTTTAACTGC AAAGCTATCG GTGAAACCGG CGAAGCAAAT
GAGCCTGGTA CCTTTAAAAG CACCATCGAA AAATTAGACT ACCTCGCAAA GCTAGGCATT
AACTGTATTG AAGTCATGCC GGTAAATGAA TTTGCGGGTG ACTTCAGTTG GGGTTACAAC
CCGGCATACC CATTTGCGGT GGAGGAAGCT TACGGCGGGC CTGATGGTTT AAAAAATCTG
GTACGCGAGG CTCACGCTAG AGGCATCGCT GTTGTGCTTG ATGTTGTCTA CAACCATTTT
GGACCAAGCG ACCTTCATTT ATGGCAATTT GATGGATGGT CTGAAAATAA CAAAGGTGGG
ATCTACTTTT ATAACGATTG GCGCAGTGAT ACGCCATGGG GTGACACAAG ACCCGATTAT
GGCCGACCAG AAGTACGCCA GTACATATAC GACAACGCAA TGATGTGGCT GGAAGAGTTC
CGTCTTGATG GATTGCGCAT GGACATGATC CCCTACATGC GCTCAGTCAG TGGCTCTGAA
GATCCGGACG ATGCAATTGA AGAAGCATAC GATTTAATTC GTTGGTTAAA TAGCGAAATT
CAACGTCGTC ACCCCGGGAA AATCGTTGTC GCAGAGGACC TACATGGAAA CGATTTTGTC
ACAGATAAAA CTGAACATGG TGGGTTAGGA TATACCGCGC AATGGGATGC AGACTTTGTT
CATCCAATAA GAGATGTACT AACACAACCT GAAGATGACA GCCGAGATCT AAATTTGGTC
GAAAAAGCAT TAACCAGGCA ATACTCTGGT GATCCATTAA GTCGTGTGGT GTATGTTGAA
TCTCATGATG AAGTGGCTAA TGGCAGCGCG CGGTTGGCGG AAGAAATAGC CCCCGGTAAT
GTTGATAAAG ACTATTTTGC ACGCCAGCGC TCTGCTATTG GTGCTGCGCT AACACTCACG
GCCCCTGGCA CCCCTATGTT GTTTCAAGGC CAAGAGTTGC TTGAAGATTT ATGGTTTGAT
GACAAAGATC CCATCGATTG GTCTCGTAAA CAACAATTCC CGCAACTTCA TAAGGCGTAT
ACAAGACTAA TAGCCTTGCG TACAGAGCAT CCGTCATTGC AAAGTGTACA TCTTAATATC
ACTCATATGG ACCACCAGAA CAAAGTACTG GCGTATCAGC GCGGTGAACG AAAAGAAGGA
GTCGCGCCTT TGCTGGTAAT TATAAACTTT AAGAATCAGC GCTTTGATAA TTATAAATTA
AGCCATTTTG ATAATGCCCA ATGGCAATGT CTGTTCAATT GGCAAAATGG TTATCATGAA
CCGAATGAAT TTCATTTTGA GCATGGTGAG GATAACGCCA CTCAGTTGAA TATTGGTGAA
TACCAAGTGT TGATCTTCGA GGCGAAACGG TAA
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| Protein sequence | MSKERIASMG LFKSDKGYEV ALWAPNAKAV AIRGEFDDWS EKGVALTLEN DGVWTGQIPQ
LKNHQKYQFS ITTQSGDVLK RNDPRARLLT NSVGASVVYD DDYQWPESPF QMPERSALVI
YELHIGTFNC KAIGETGEAN EPGTFKSTIE KLDYLAKLGI NCIEVMPVNE FAGDFSWGYN
PAYPFAVEEA YGGPDGLKNL VREAHARGIA VVLDVVYNHF GPSDLHLWQF DGWSENNKGG
IYFYNDWRSD TPWGDTRPDY GRPEVRQYIY DNAMMWLEEF RLDGLRMDMI PYMRSVSGSE
DPDDAIEEAY DLIRWLNSEI QRRHPGKIVV AEDLHGNDFV TDKTEHGGLG YTAQWDADFV
HPIRDVLTQP EDDSRDLNLV EKALTRQYSG DPLSRVVYVE SHDEVANGSA RLAEEIAPGN
VDKDYFARQR SAIGAALTLT APGTPMLFQG QELLEDLWFD DKDPIDWSRK QQFPQLHKAY
TRLIALRTEH PSLQSVHLNI THMDHQNKVL AYQRGERKEG VAPLLVIINF KNQRFDNYKL
SHFDNAQWQC LFNWQNGYHE PNEFHFEHGE DNATQLNIGE YQVLIFEAKR
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