| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1939 |
|---|
| Symbol | |
|---|
| ID | 4172074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2349296 |
|---|
| End bp | 2350849 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638054947 |
|---|
| Product | tryptophan halogenase |
|---|
| Protein accession | YP_661511 |
|---|
| Protein GI | 109898256 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGTGAGT CAGGTCTTAG GTTACAAATT CCCTGTTTTA ATTTAGTAAG GCGTAGTATG
TCTCAACCAT TTAATATTGT TATCCTTGGC GGCGGCTCAG CAGGTTGGAT GGCGGCTAAT
TTATTTGCTC ACAAGTGGGC TGACAAGTTG GTAGATAAGT CCTTAACAAT AACCTTGGTT
GAATCACCAG ATATCGGTAT TGTCGGGGTT GGAGAGGGTT CAACCCCCAC ACTGAAACGT
TTTTTTAGCA TGCTTGGTAT TGGGGATAGC GACTGGATGC CTCAGTGCAA CGCCACGTAC
AAAATGAATA TCGCCTTTGA GAATTTCAGC CCTGCATCGG GTAACACGCG ATACAGCCAT
CCCTTTATAT CGCAAATAGA CACCTTCACC CAACGGGCAT TTATGGTGAA CGCCCGCACT
CGTCGCCTCG GGCTTGATAC GCACACAAAC CCTGGCGATT TTTTATTAAA TGGCGTACTC
GCTAAGCAGA ACAAAGGCCC ACACACACCG GCTAATTTTC CGTTTAGTAT AGAATACGGT
TATCACTTTG ATTCCCACTT GTTAGGTGCC TTTCTACAGC AACATGCTAT CGGTCTAGGC
GTGGATCACG TTCAAGCAAA TGTAGAAAGC ATCAAGCAAC ATCCTAATGG TGATATCGCG
GCGCTGCACT GTAAAGAAGG CATTGAGATA AGCGGTGATT TATTTGTAGA TTGCAGCGGC
TTTTCCAGCG TACTGATGCA AAAGACCTTA GGCGTCAAAT TTAACAGTTA CAAAGACAAT
CTATTTAACG ACTCTGCGGT TGTGGTGCCA ACGCCTATAA GCGAACATAT TCCGGTTGAG
ACGACATCCA CGGCCTTATC AGCAGGCTGG TGCTGGAAGA TCCCCCTAAC GAATCGATTC
GGTAACGGTT ATGTCTATAG TTCCGATTTT GTCAGTAAAC ACGACGCTGA ACGAGAGTTG
AAGAACCATC TGCAACTAAA TGAAAATACT GAATGTCGTC ATTTATCCAT GAAGGTGGGG
GCCTTGGAGA AACAATGGCA CAACAACTGT TTAGGTATTG GGCTGTCAGC AGGCTTTATC
GAGCCCCTTG AAGCAACCGC TTTACACCTT ACGCAGATAT CCATCGAGCA ATTCATATTA
GAATTCGAAG AGGGCGACTT TTCTAATCGT TTGCAAGGGC AGTTCAACGC CAAAATGCAA
TTTAGAACGG AGCGCACGCG GGATTATATT GTGGCGCACT ACAAGCTCAA TACCCGCAAC
GACAGTGAGT ATTGGCGAGC GAACCGCAAT AATATGCACC TGTCTGAATC ACTGTTGCAG
ATATTGGACG TTTGGTATAA ACGTGGGGAT TTAGAAGCAG AGATCACGCG CCAAGACCTT
TCTACGCACT TTAACGCCGT ATCATGGAAT TGCTTGTTAG CAGGTTATGG CGCATTTCCG
GCACTGGCCG CAAAACAGCC TGGCACAGGC GATTTGTACA AAGAACAAAA CATCGAAACG
TTCCTACAAG GGTGCGCATT AAACTTCACC AGTCACGCTG GTCAGTTGTT TTAG
|
|---|
| Protein sequence | MCESGLRLQI PCFNLVRRSM SQPFNIVILG GGSAGWMAAN LFAHKWADKL VDKSLTITLV
ESPDIGIVGV GEGSTPTLKR FFSMLGIGDS DWMPQCNATY KMNIAFENFS PASGNTRYSH
PFISQIDTFT QRAFMVNART RRLGLDTHTN PGDFLLNGVL AKQNKGPHTP ANFPFSIEYG
YHFDSHLLGA FLQQHAIGLG VDHVQANVES IKQHPNGDIA ALHCKEGIEI SGDLFVDCSG
FSSVLMQKTL GVKFNSYKDN LFNDSAVVVP TPISEHIPVE TTSTALSAGW CWKIPLTNRF
GNGYVYSSDF VSKHDAEREL KNHLQLNENT ECRHLSMKVG ALEKQWHNNC LGIGLSAGFI
EPLEATALHL TQISIEQFIL EFEEGDFSNR LQGQFNAKMQ FRTERTRDYI VAHYKLNTRN
DSEYWRANRN NMHLSESLLQ ILDVWYKRGD LEAEITRQDL STHFNAVSWN CLLAGYGAFP
ALAAKQPGTG DLYKEQNIET FLQGCALNFT SHAGQLF
|
|---|
| |