| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1916 |
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| Symbol | |
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| ID | 4172762 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2319872 |
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| End bp | 2321980 |
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| Gene Length | 2109 bp |
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| Protein Length | 702 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638054924 |
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| Product | 3-hydroxyacyl-CoA dehydrogenase, NAD-binding |
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| Protein accession | YP_661488 |
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| Protein GI | 109898233 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.891086 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTCAAG CAGTGATAGC TGAAGTACAA GGAAATGTCG CGGTTTTGTA TATGCAGAGC
CCACCGGTTA ATGCGTTATC TAAGTCAGTT CGTGTTGGCT TAATTGAAAA CATTAACCAA
GCGCTGGACA ACGATCAGGT CGAAGCAATT GTAATCTCAT CTAAGTTAGC ATTGTTCTCT
GGCGGTGCTG ATATCAGTGA ATTTTCTGGC GGTAATTTAG AGCCGCATCT ACCTACCGTT
TTAGATGTTA TCGAAAATGC AAGTAAGCCA GTTATTGCCG TACTCAATGG CCCTGCTTTT
GGTGGTGGTC TAGAAGTGGC GCTTTCATGT CATTATCGCG TTACGTTTGC CAGTAACAAG
GTTGGCTTGC CAGAAGTGAA TTTAGGTATA TTACCTGGCG CGGGCGGTAC TCAGCGCCTT
CCTCGTTTGG CAGGCGTGGC AAAAGCACTC GATATGATAG TGTCGGGACG CCCAGAAAAA
GCCAGCAAGT TAGCAGGTGT ATTTGACTTA ATAGTTGAAG ACCCAACAAA CTTACTCAGT
GAAGCAATGG CATTTGTCCA AAAAGTGGTT GCTGAGGGTG CGAAGGTGCG CAAAACCTCT
GATGTGGCTA TTGATAAAGC TAGCGCGCCT GATGAGCTAT TTGCTCAATA TCGTCAAGGC
CTTAAAAAGC AAGCTCGCGG ATTTTTTGCC CCTGAGCGTT GTATCCAAGC TGTTGAAGCA
TCTGTTTCGT TGCCATTTGA GCAAGGCTTG GTGCGTGAAA GTGAATTGTT CATGGAATGC
ATGGGCTCGA AAGAAGCTCG CGCACAGCAG CACTTTTTCT TTGCAGAGCG CGCGGCTGCT
CACGTGAGCG ATTACGACAA ATCCACACCT ACCCGAGATA TCAAAAAGGT CGGCATTATT
GGCGCAGGCA CCATGGGCGG CGGGATCGCT ATGAACTTCG CCAATGCTGG TATACCGGTC
ATCATGCTTG AACTTAAGCA AGAGGCATTG GACAAGGGCC TTGCGCTTAT TCGTAAGAAC
TACGAAAACT CCGCTAAGAA AGGCAAGCTT ACCCAACAAG CTGTTGAAGA TCGCATGGCG
TTATTGCAAG GTTCAACTGA ATACGAAGCA CTAAGCGACG TAGATTTAGT TATTGAAGCC
GTTTTCGAAA AGATGTCAGT CAAAAAAGAA GTATTTGGTG CACTGGATAA AGTATGTAAG
AAAGGCGCCA TACTCGCTTC AAACACCTCT ACTTTAGATG TCAACGAAAT TGCGGCGTCT
ACATCACGTC CTGAAGATGT GATTGGTTTG CACTTCTTTA GCCCAGCTAA CGTGATGAAA
CTGCTTGAAG TCGTCAAAGC TGAAAAAACC TCTGCAGACG TTATCAAAAC CTGTATGCAG
ATGGCGAAGA AAATCAATAA AGTCGCTGTG CTGGTTGGTG TTTGTTTCGG CTTTGTGGGT
AACCGCATGA TCGAACCGTA CGGCCGTGAA GCCGCTCGCT TAATGCTTGA AGGGGCTACG
CCGCAGCAAA TCGACAAAGT GATTTACGAT TTTGGTTTGC CTATGGGCCC ATTCACCATG
GGAGACATGG CAGGCTTAGA CATCGGTTTT TACGTACGCG AATCACGACG TGAATTTATT
GCCCATGATC CGAGTTACTG TGTGGTATCT GACCGCTTAG TGAAACAAGG TCGTGTCGGT
CTTAAATCTG GTCGCGGTGC TTATATGTAT GAGCCGGGTA ACAGAATGCC GATCCCTGAC
CCTGAAGTGG TTGAAATGGC AAAAGAAGAG GCCGCACGTT TAGGCATTGC CCAACGTGAC
ATCTCAGACC AAGAAATTCT AGAGCGCATT ATCTTTCCTT TGATTAACGA AGGTGCATTG
ATTTTGGAAG AAGGTATTGC CGCTAAATCA AGCGATATCG ATGTTATTTA TGTTTATGGT
TACGGCTTCC CGGTTTACCG CGGCGGTCCT ATGCAATACG CAGATGAAAT TGGCTTGAAA
AAAGTTTATG ACGCGATGTG TAAATATCGC GATGAATTAG GTGAGTACGG CGGCCACTGG
TTTGAACCAG CTCCGTTGTT GAAACAACTG GCTGAGCAGG GCAAACGCTT TGCAGATTTC
AAACAGTAA
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| Protein sequence | MSQAVIAEVQ GNVAVLYMQS PPVNALSKSV RVGLIENINQ ALDNDQVEAI VISSKLALFS
GGADISEFSG GNLEPHLPTV LDVIENASKP VIAVLNGPAF GGGLEVALSC HYRVTFASNK
VGLPEVNLGI LPGAGGTQRL PRLAGVAKAL DMIVSGRPEK ASKLAGVFDL IVEDPTNLLS
EAMAFVQKVV AEGAKVRKTS DVAIDKASAP DELFAQYRQG LKKQARGFFA PERCIQAVEA
SVSLPFEQGL VRESELFMEC MGSKEARAQQ HFFFAERAAA HVSDYDKSTP TRDIKKVGII
GAGTMGGGIA MNFANAGIPV IMLELKQEAL DKGLALIRKN YENSAKKGKL TQQAVEDRMA
LLQGSTEYEA LSDVDLVIEA VFEKMSVKKE VFGALDKVCK KGAILASNTS TLDVNEIAAS
TSRPEDVIGL HFFSPANVMK LLEVVKAEKT SADVIKTCMQ MAKKINKVAV LVGVCFGFVG
NRMIEPYGRE AARLMLEGAT PQQIDKVIYD FGLPMGPFTM GDMAGLDIGF YVRESRREFI
AHDPSYCVVS DRLVKQGRVG LKSGRGAYMY EPGNRMPIPD PEVVEMAKEE AARLGIAQRD
ISDQEILERI IFPLINEGAL ILEEGIAAKS SDIDVIYVYG YGFPVYRGGP MQYADEIGLK
KVYDAMCKYR DELGEYGGHW FEPAPLLKQL AEQGKRFADF KQ
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