Gene Patl_1904 details

Gene Information

• Locus tag: Patl_1904
• ID: 4172750
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 2302176
• End bp: 2304242
• Gene Length: 2067 bp
• Protein Length: 688 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 638054913
• Product: agarase
• Protein accession: YP_661477
• Protein GI: 109898222

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.407826
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATAAAAA AATACAATAA TAAATGGTCT CTACAAAAAG TCGCTGTAAC GCTTTTGCTT 
ACAACGACTT CCAACAGTTT TAACATTGTT CATGCAGCGG AAAATAAAGT TTCTGTTGAT 
GTTAATTTAG ACACTAAACA TCGTATAGGT AATATTGAGC GCTTTAACCG TGAAAAATTC 
ATCTCATTGC ATTCGGCCCC AACAGAAAAT GAATGGGATC ATGATAACAA AGGCAACAAC 
GCCAAATCAG ATCTAATTGG TAGCTTTATT AATGGTTATG ATGTGTATTT TGGCCGTGAT 
ACGGGATACA TGAAAAATCA ATTATTTGCT CAAAAGCAAG ATGGTAATCG TTTAGGCTTT 
ATTGATGAAT CTGTTTTAAC TACGAAGGGC AATGCCGCAA TTAACTCGTT TGAAAACAGT 
AACGCTACTC GGTTTGTTAA CGCCAGACGC TTTAAAAATA GATCTAAAGA TATGGTTGTT 
GGTGGGCAAG TACATCCTTA TTATCCTGAC GGCACTAATA TTGGTAATAG TAATTGGGCA 
TTCTCACAAA AAAACACTGA CCAAGAGCCT ATTGGTACCG CCACAGGCCA TTACATGGGG 
CAGTTTCTAC AAAAATATTT TGCGCAAACG AACACAGCTG CAGGTGCGCC TAAACCTGCT 
TATTTAGAAG TTGTAAATGA ACCTTTGTAT GATCTAAATA TTGCACCTAA AGACGGACGA 
GATAAGGCAC CTATAGCTGA TATCTTCAAA TACCATAAAA GTGTCGCGCA AGAAATTCGT 
AAAAGTAATA ATCAAGCATT AAACAAAAAT ATTAAGGTTG CAGGCTATAC CGTTGCCTTT 
CCTAACTATG ATTGGGATAA TTTTGAACGC TGGGAAAGTA ATGACAAATT TTTCATTGAT 
ACGGCAGGTG CCGATATGGA CGTATTTTCT ATTCATCTGT ATGACTTTCC AACTCACCCT 
CGAGGAGAGG AATATCGACG AGGCAGTAAT GTCGAAGCAA CACTCGATAT GCTAGAGCAA 
TATTCAAATA TTAAATTCGG TCGTACTAAA CCATTATTAA TTTCAGAATA TGGTGCATCT 
GTACATGCTT TGCGAAACAA ACCATGGTCA CAGGTAAGAG ATGCTGAAAA GTTACGCGGT 
TATAATGCAC TATTAACCCA TTTTCTAGAA CGTCCTGACG TTATAGCTAA AGCAATTCCT 
TTTATTCCCG TGAAAGCTGA ATGGGGTCGT CATGGCGACA CCGGCTACCC TTATGAAAAT 
AGATTAATGA GACAACAATT TGAAAAAGCA GGGCAAACAG GAACCGATTG GATCTACACT 
GACTTAGTAA AATTCTTCGA ATTGTGGTCT GAGGTTAAAG GTATACATGT AGACAGTTGG 
GCATCTGATC TTGATATCAT GGTCGATGCA TATGTACAGA ATAATAAAGC ACATATCATA 
ATGACGAGTT TAGAGTTTCA AGATACTGAT GTTGCATTAA AAGCACTTGG GATCGATGGA 
AATACGATCA AATCAGTCCA AGTAAAAACC TTGTCTTATG ATAATAACAA CCATGCAAAA 
TTGGCTACTA AAACAATGTC ATCGGTACCT AAAACCGTTT CTTTGCCGAA AGAAAGTACC 
CAAATCATGA CAATTACTTA CCACAATAAA ATTAACATTG ATAAGGTGAA CCAACAGAAC 
AAATATTATG CCACTACCTA TAAGCAGCCT ATAAAAGCGA ACGTGGATAT GTATTTTAAT 
ATCAAAGATG TGGAGGTAGG AGCACAAGGC GAAGCCGTTT TACGTTTAGG TATTGGTCGA 
GAACACGGTA AATCGCTCAC ACCGACAGTA AACGTGAATA ACGTACCAGT TGAAGTGCCT 
ACTGACTTCA GAGGGTATGA CCAGAAACAA GGTAAAACTC GCAACGGACG CGCAAGTTTC 
TTTGGCGTCA TTGAAATACC TGTGTCACAT GATCTACTAC AAGGCAGCAA TTGGATACGT 
ATCAACTTTG ATGATGCCGG CGGATTTGTA ACAAGCGCAG CTTTGCAGGT TGTTAACAGT 
AGTGACGAGA TTACGCGATC ACTTTAA 

 

Protein sequence

MIKKYNNKWS LQKVAVTLLL TTTSNSFNIV HAAENKVSVD VNLDTKHRIG NIERFNREKF 
ISLHSAPTEN EWDHDNKGNN AKSDLIGSFI NGYDVYFGRD TGYMKNQLFA QKQDGNRLGF 
IDESVLTTKG NAAINSFENS NATRFVNARR FKNRSKDMVV GGQVHPYYPD GTNIGNSNWA 
FSQKNTDQEP IGTATGHYMG QFLQKYFAQT NTAAGAPKPA YLEVVNEPLY DLNIAPKDGR 
DKAPIADIFK YHKSVAQEIR KSNNQALNKN IKVAGYTVAF PNYDWDNFER WESNDKFFID 
TAGADMDVFS IHLYDFPTHP RGEEYRRGSN VEATLDMLEQ YSNIKFGRTK PLLISEYGAS 
VHALRNKPWS QVRDAEKLRG YNALLTHFLE RPDVIAKAIP FIPVKAEWGR HGDTGYPYEN 
RLMRQQFEKA GQTGTDWIYT DLVKFFELWS EVKGIHVDSW ASDLDIMVDA YVQNNKAHII 
MTSLEFQDTD VALKALGIDG NTIKSVQVKT LSYDNNNHAK LATKTMSSVP KTVSLPKEST 
QIMTITYHNK INIDKVNQQN KYYATTYKQP IKANVDMYFN IKDVEVGAQG EAVLRLGIGR 
EHGKSLTPTV NVNNVPVEVP TDFRGYDQKQ GKTRNGRASF FGVIEIPVSH DLLQGSNWIR 
INFDDAGGFV TSAALQVVNS SDEITRSL