| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1812 |
|---|
| Symbol | |
|---|
| ID | 4172060 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2178101 |
|---|
| End bp | 2179327 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638054822 |
|---|
| Product | acyl-CoA dehydrogenase-like |
|---|
| Protein accession | YP_661387 |
|---|
| Protein GI | 109898132 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTCG ATTACTCAGA AAAAACACAA GATCTTATCG CCCGTTTAGA AGCCTTTATG
GACGAGCACA TTTACCCTAA CGAAAAGCAA TATCTTGCAG ATGTTCAGGC TGCTTCTGCT
AATCCAGAAA CTCGCTGGAA AACCTTACCT TTGATTGAAG AGTTAAAGGA AAAGGCCAAA
GCAGCAGGCT TGTGGAATCT ATTTTTACCC GAAGAGTATT TGCCCTATGG TGCCGGTTTA
AACAACCTTG AGTACGCTCC TTTATGTGAA ATAATGGGGC GTGTCATGTT CAGTTCAGAA
GTATTCAACT GCAGCGCACC TGATACAGGC AATATGGAAG TGCTTGCCCG TTATGGCTCA
CAAGAAGATA AAAAACGCTG GTTAGAGCCT CTTCTTGAAG GCAAAGTGCG CTCTGGTTTT
GCGATGACCG AGCCTGCAGT AGCCTCGTCT GATGCCACCA ATATTGAAAC ATCCATTGTG
CGTGACGGTG ATGAGTACGT CATCAATGGA CGTAAGTGGT ATACCAGTGG TGCCATGAAT
GAAGACTGTA AAATTTTAGT GGTAATGGGT AAAACGGACC CCAATGCCGC CCGTCATGAA
CAACAGTCAC AAGTATTGGT GCCTATCGAT ACGAAAGGTG TAACCGTTTT ACGCCCGCTG
AGCGCAATGG GATTCTATGA TGAGCCGGTA GGTCACGCTG AAGTATTGTT CGAGGACGTA
CGCGTGCCTG CTTCCAGTTT ATTGATGGGG GAAGGTAGAG GGTTTGAAAT CGCGCAAGGT
CGTTTGGGGC CGGGCCGAAT TCATCATTGC ATGCGCTTGA TTGGGTGTGC ACAGCGTGCG
CTTGATTTGG CCTGCGAGCG AGTAGAGTCG AGGATTGCCT TTGGTCAGCC ATTGAGCAAG
CAACAATCGG TACGTGAAAG CATTGCTAAA ATGCATTGCG AGATTGAACA AGCGAGGTTG
CTAACGCTAA AAGCGGCTGA CAAGATGGAT CGTTATGGCA ACAAGGTCGC ACGAGACATC
ATTGCGGCGA TTAAAATAGT CGCCCCTTCT ATGGCGTGTA ATGTGATTGA TCAGTCAATA
CAGATGCATG GTGCAGCGGG TACCAGCCAA GACTTTATCT TGTCAGCTAG CTACGCGTAC
GCGCGCACAA TTCGCTTAGC TGATGGCCCA GATCAAGTGC ACATGATGCA GCTGGGACGC
AATTTAATTA AAGATCACAA CGCATAA
|
|---|
| Protein sequence | MNFDYSEKTQ DLIARLEAFM DEHIYPNEKQ YLADVQAASA NPETRWKTLP LIEELKEKAK
AAGLWNLFLP EEYLPYGAGL NNLEYAPLCE IMGRVMFSSE VFNCSAPDTG NMEVLARYGS
QEDKKRWLEP LLEGKVRSGF AMTEPAVASS DATNIETSIV RDGDEYVING RKWYTSGAMN
EDCKILVVMG KTDPNAARHE QQSQVLVPID TKGVTVLRPL SAMGFYDEPV GHAEVLFEDV
RVPASSLLMG EGRGFEIAQG RLGPGRIHHC MRLIGCAQRA LDLACERVES RIAFGQPLSK
QQSVRESIAK MHCEIEQARL LTLKAADKMD RYGNKVARDI IAAIKIVAPS MACNVIDQSI
QMHGAAGTSQ DFILSASYAY ARTIRLADGP DQVHMMQLGR NLIKDHNA
|
|---|
| |