| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1758 |
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| Symbol | |
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| ID | 4173687 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2108316 |
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| End bp | 2110529 |
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| Gene Length | 2214 bp |
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| Protein Length | 737 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638054768 |
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| Product | exodeoxyribonuclease V, alpha subunit |
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| Protein accession | YP_661333 |
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| Protein GI | 109898078 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR01447] exodeoxyribonuclease V, alpha subunit
[TIGR01448] helicase, putative, RecD/TraA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTAAGCA AATTGATGAT AAAAAATGAT GTATCAACCC CACAGAGTCA GCAAACACAA
GTTCAGGCAT CACCGGAGCC GCCCACGACT GCCAGTATTC TACAAAGCTT GTTGAGTGTA
GGTCGAATTC GCCCATTGGA CGTGGCATTT GCTGAGTTTA TTATGCTTCA CGAGCGTAAT
AAATTGGCGG TAAACACCGC TGGCATTCAC GCGCTGGGTT TACTCGCTGC TTATCTCAGC
AGCCGATTGG GCGAGCAAGA TAGCTGCCTC AATCTCGATG GATTTTATCA GCCATTTTTA
CCCTTTTATC GTTTCGATTC TGCGCCTGTG CTTATGTCTA TTTTAGAGGC ATCTAGCTGC
GTTTCGGTAG TTGAAGAGCC GCGCTTTAAT CAAGCATCTG ATGCTGTGGC CGGTTCAGAT
ACCCGTTCTG ATACAGGTAA CAATACTTCA TCGCATGATC GTTATTCTTC GGCCCAGCAT
TTACCGGCCC AGCAGTTATC GGCCAAGCAG TTACACACTC ATCAGGCGCA GGAACATCAG
TCTCAAAGTA AGCCTTTGAT TTTACAGGGG CATGAACTTT ACATGCAGCG TTATTGGCAG
TACGAAGTGC AACTGGCAGA AAAAATAAAC AGCATGACAG GGCGCACGAG TACCTTAGAT
ATTGAACAGG GCAGAGCATT GCTAGGGCAA TTGTTTGTTT CAGCACCCGA TGATGTAGGT
GATGAAAGAG ACCTTAATGA TGTAAACCGT CAAAGTGGTC ATGGCCACGC CCAGCGGGAG
CCTGAAATAG ATTGGCAAAA AGTGGCGGTG TGTCTTGCGG CGAGCCAAAG CGTGAGTGTG
ATCACCGGTG GACCAGGGAC AGGGAAAACA ACCACTGTGA TCCGGTTGAT GGCTCTTTTA
CAGGGCTTGG CGCGACATAA AGGCAAAAAA CTGCAAATTA AACTGGCTGC GCCAACAGGA
AAAGCCGCTG CGCGTTTGAG CCAGTCTATC AGTGCCGCCA TGGACAAACT ACCGGACGCC
TTAAAGCCTG ATTTACCTAG TCAGTGCAGC ACTATTCATA GGTTATTGGG CAGTATTCCA
AATAGCCCTT ATTTTCGCTT TAACCAGCAA CACCCCTTGC ACGTCGATGT GCTGATAGTG
GATGAAGCGT CCATGGTTGA TTTACCCTTA ATGAGTAAGC TATTTGCGGC TTTGCCTAGG
CATGCAAAGA TTGTTTTATT AGGTGATAAA GACCAACTCG CTTCGGTAGA GGCGGGCAGT
GTGCTGTCTG ATATCTGTTC TGCGGCATTG AATTTTTCGC CCACTGTCTT CAATCAATCC
CCGCCATACA GTGATCAAGC ACTTGGTGTG GTAAAAGACC TGTGCCAGAT TGAGTTAAAC
ATCAATACCC TAAATAAGGC GCCGATTAGC AATAGCCTTG CCTTGCTGCA CAAGAGTTAT
CGTTTCAGTG AGAAAAGTGG TATTGGCCGC TTAGCGCGGG CTATTAACAT GGGGCGATTG
GCGAATGCCA AAGCATTATT TTCAGATGAT GTTTACCAAG ATGTAGTATG GCAAACCAGT
GATGATCCAA AAGCCTTGGT GAATAGACTG CTGCCGGATT ACCAACGATA TTTCGAGCGC
GTAAGGCAGG TCTGCGCCCG AGGAACCCTT AGCACGCAGG GTATTGAGGT CTTTGCGTTA
TTACAGCAAC AACAAGTCTT GTGCGCGCAA AAAGAGGCGA GTTGGGGCGT AAAGCAAATG
AATGTCTTGA TTGAGTCTGA GCTGAATAAA CACGGAGCCA TTGAACTAGG TCGAGATTTC
TATATTGGCC GGCCCGTTAT GCTTAAGCAA AACGACCATA GTTTAGGCTT GTTTAATGGT
GATATTGGTA TTGCCATGCC TGACGAGGAA AACGAAGGTC TGATGAAAGT GTGGTTTGTT
ACTGAGCAAA ACACCTTGCG TGGGGTGTTG CCCAGTCGGT TACCTCCCCA TGATACGGTT
TACGCCATGA CGATACACAA AAGCCAAGGG TCTGAGTTTG ATCATGTTTA TTTGTGCTTG
CCACGCATTG AAACGCGCTC TCAAGCGAGA TTGCTCAGCC GAGAGCTGCT GTACACTGGC
CTTACGCGGG CGAAGAAATC GTTCAACTTG TATAGTGACG AGCAGGCCTT GTCGATCAGT
GTGGCAAGGC GTTGTCAGCG AGGGAGTGGG CTAGCTAAGC GTTTACTCCC GTAA
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| Protein sequence | MVSKLMIKND VSTPQSQQTQ VQASPEPPTT ASILQSLLSV GRIRPLDVAF AEFIMLHERN
KLAVNTAGIH ALGLLAAYLS SRLGEQDSCL NLDGFYQPFL PFYRFDSAPV LMSILEASSC
VSVVEEPRFN QASDAVAGSD TRSDTGNNTS SHDRYSSAQH LPAQQLSAKQ LHTHQAQEHQ
SQSKPLILQG HELYMQRYWQ YEVQLAEKIN SMTGRTSTLD IEQGRALLGQ LFVSAPDDVG
DERDLNDVNR QSGHGHAQRE PEIDWQKVAV CLAASQSVSV ITGGPGTGKT TTVIRLMALL
QGLARHKGKK LQIKLAAPTG KAAARLSQSI SAAMDKLPDA LKPDLPSQCS TIHRLLGSIP
NSPYFRFNQQ HPLHVDVLIV DEASMVDLPL MSKLFAALPR HAKIVLLGDK DQLASVEAGS
VLSDICSAAL NFSPTVFNQS PPYSDQALGV VKDLCQIELN INTLNKAPIS NSLALLHKSY
RFSEKSGIGR LARAINMGRL ANAKALFSDD VYQDVVWQTS DDPKALVNRL LPDYQRYFER
VRQVCARGTL STQGIEVFAL LQQQQVLCAQ KEASWGVKQM NVLIESELNK HGAIELGRDF
YIGRPVMLKQ NDHSLGLFNG DIGIAMPDEE NEGLMKVWFV TEQNTLRGVL PSRLPPHDTV
YAMTIHKSQG SEFDHVYLCL PRIETRSQAR LLSRELLYTG LTRAKKSFNL YSDEQALSIS
VARRCQRGSG LAKRLLP
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