| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1694 |
|---|
| Symbol | |
|---|
| ID | 4171902 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2027077 |
|---|
| End bp | 2028570 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638054704 |
|---|
| Product | NusA antitermination factor |
|---|
| Protein accession | YP_661269 |
|---|
| Protein GI | 109898014 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0195] Transcription elongation factor |
|---|
| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAG AAATTTTGTT AGTGGCGGAA GCCGTTTCAA ATGAAAAACA AGTTCCAAGA
GAAAAAATCT TTGAAGCGTT AGAGTTTGCC ATTGCAAGTG CTACTAAAAA GAAAACTGAA
GGCGAAATTG AAGTACGTGT TGCTATTGAC CGTATTACTG GCGACTTTGA TACGTTCCGT
CGTTGGATGG TTATCGCTGA TGATCAAAAG CAAGAGAATC CTTTTGCAGA AATGACTATT
TCTGCGGCTC AAATTGATGA GCCTGACATT CAACTAGGTG ACTATGTTGA AGATCAAATC
GAATCAATCA AATTTGACCG TATAACCACA CAAACGGCTA AGCAAGTTAT CGTACAAAAA
GTACGTGAAG CTGAGCGCGC CCAAGTGATG GCTGAATACG AAGAGCGTGT GGGTGACTTA
GTCACTGGTA CCGTTAAAAA GGTCAATCGC GACAACATCA TCATAGACTT GGGTAACAAC
GCGGAAGGCG TAATTTACCG TGACGATATG TTACCTCGTG AAACGTTCCG CCCAGGTGAC
CGAGTACGTG GATTATTGTA CGTCATTCGC CCTGAAGCAC GCGGTGCTCA ATTGTTTGTG
AGCCGTACAC ACCCAGACAT GCTGGTTGAG TTGTTTAGAC TGGAAGTGCC TGAAATCGCA
GAAGAAACCT TAGAAATTAA GGCCGCTGCT CGCGATCCTG GTTCTCGCGC TAAAATCGCG
GTTAAAACCA ACGATAAACG TCTTGACCCA GTAGGAGCTT GTGTAGGTAT GCGTGGTTCA
CGCGTACAAG CAGTCAGCAG CGAATTAAGT GGCGAGCGTG TAGACATCGT ATTGTGGGAT
GACAATCCAG CGCAATTCGT TATCAATGCA ATGGCGCCGG CTGAGGTTGC ATCCATCGTT
GTTGATGAAG ATAACCACAC CATGGATGTT GCGGTTGAAT CTGACAATCT AGCTCAGGCG
ATTGGTCGTA GTGGTCAAAA CGTCCGTTTA GCCGCTCAGC TTACTGGCTG GGAATTAAAC
GTGATGACGG TCGAAGACTT AAACAACAAA CACGATGAAG AAAATTCAAA AGTGTTAGCT
GTGTTCGTTA ATGGTCTTGA TATTGACGAA GAGTTTGCAG CGGTATTGGT TGATGAAGGT
TTCTCTACGC TTGAAGAAAT CGCTTATGTA CCCATTAATG AGCTACTTGA AATAGACGGT
CTTGATGAAG ACATTGTTGA TGATTTACGT AGCAGAGCGC GCGCAGCACT CACCACGCAA
GCGTTAGCGA ACGAAGAGAC ATTGGAAGCC TCTGAACCAA AAGAAGAGCT ATTAAGTTTA
GCCGGTATGG AACGCCATGT TGCCTACACA TTGGCAAGTC GCGGCATTAC CGATCTTGAA
GCACTTGCGG AGCAAGGCGT AGATGAGATC AGCGATATTG AAGAACTAGA CGAAGAAAAA
GCGGGCCAGT TAATTATGGC TGCACGTAAC ATTGTCTGGT TTAACGAAGA ATAG
|
|---|
| Protein sequence | MNKEILLVAE AVSNEKQVPR EKIFEALEFA IASATKKKTE GEIEVRVAID RITGDFDTFR
RWMVIADDQK QENPFAEMTI SAAQIDEPDI QLGDYVEDQI ESIKFDRITT QTAKQVIVQK
VREAERAQVM AEYEERVGDL VTGTVKKVNR DNIIIDLGNN AEGVIYRDDM LPRETFRPGD
RVRGLLYVIR PEARGAQLFV SRTHPDMLVE LFRLEVPEIA EETLEIKAAA RDPGSRAKIA
VKTNDKRLDP VGACVGMRGS RVQAVSSELS GERVDIVLWD DNPAQFVINA MAPAEVASIV
VDEDNHTMDV AVESDNLAQA IGRSGQNVRL AAQLTGWELN VMTVEDLNNK HDEENSKVLA
VFVNGLDIDE EFAAVLVDEG FSTLEEIAYV PINELLEIDG LDEDIVDDLR SRARAALTTQ
ALANEETLEA SEPKEELLSL AGMERHVAYT LASRGITDLE ALAEQGVDEI SDIEELDEEK
AGQLIMAARN IVWFNEE
|
|---|
| |