| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1656 |
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| Symbol | |
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| ID | 4174085 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1972921 |
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| End bp | 1973478 |
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| Gene Length | 558 bp |
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| Protein Length | 185 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638054666 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_661232 |
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| Protein GI | 109897977 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.104022 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAATTTGC GAAAGCAATT TAAAAAAGCC TCGGTCTCTA GTGACATGCT AGATAAACAA
AAACGATACG AAACCCTAGT CCAAGCATTA CATGGTGATA TATTCCGCTA TGCATACTGG
CTGGTTAAAG ATAAAGCGGT GGCAGAAGAC ATAGTCCAAG AGACATTTCT GCGTGCATGG
AAATCATTGG ATTCATTAAA GGACGAAAAA GCCGCCAAAT CTTGGTTGAT TACGATATTG
CGTCGGGAAA ATGCCCGACG CTTTGAACGT AAGCAGTTCG ACTTGGTTGA TATCGATGAT
GTGTCTATCT CAGACGATCA GTTGACTCAC GAAGTTGAGA TTGAGCACCG AGAGTTACGG
AAAATAATGG CGTCTTTGAC TGAAGAGTAT AGAGAGCCAT TAATGTTGCA AATCATGTTT
GGATACAGCG GAGATGAAAT TGCAGCTCAA CTAGATTTAA ACAAGAATAC CGTAATGACC
CGACTATTTA GGGCGCGAAG CCAAATTAAA GAGGCGCTAG AGAAATCAAA TGACAATCGA
GAACGGAAAA ATGGATGA
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| Protein sequence | MNLRKQFKKA SVSSDMLDKQ KRYETLVQAL HGDIFRYAYW LVKDKAVAED IVQETFLRAW
KSLDSLKDEK AAKSWLITIL RRENARRFER KQFDLVDIDD VSISDDQLTH EVEIEHRELR
KIMASLTEEY REPLMLQIMF GYSGDEIAAQ LDLNKNTVMT RLFRARSQIK EALEKSNDNR
ERKNG
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