| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1647 |
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| Symbol | |
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| ID | 4174076 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1963181 |
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| End bp | 1964908 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638054657 |
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| Product | TrkA-C |
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| Protein accession | YP_661223 |
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| Protein GI | 109897968 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0471] Di- and tricarboxylate transporters |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACATAA ACCAGCTTCT GGTATTAGCA ATATTTACCG GTACATTAGC GGCGCTTATT
CTCACGAATA AGCGCCCTTC TTCAATTTTT GCGGGGACAT TGTTAGCACT TATATTAAGT
CAGCAATTAT CGCTTTCAAA CATCATCACC AACTTCACAA ACCAAGGATT AATTACCCTT
ATTCTGCTGT TGATTGTAAG CACAGCAGTA GATAAAACGT CCCTCGTCAA ACGGTTGGGC
CGCACGCTTA TCGTTGCGAG CTTCAAACGC AGTTACTGGC GCTTATTTGG GCTAACGTTT
GCTTCTTCAG CATTGTTGAA TAACACCGCC GTGGTAGCAA GTTTGATTGG TCCGACTAAA
CAAAATCAAT ACCATCCTGC TTCTAAGTTA CTTATCCCTC TTTCATACGC AGCAATTTTA
GGCGGTACAG TGACACTTAT AGGTACCTCC ACCAACCTCA TAGTTGATAG TTTCATGCGC
GAGCATGGTC ACGCAGGTTT TAACTTCTGG GACTTTACGC TCTATGGCTT GGTCGCAGGT
TTAAGCTGTG GCGTGTTAAT GTTTTTGTTA ACGCCACTGT TGCCCGTAAT CGAAAACAAA
AACCGCAAAT ACAATAGTTA TTTTATCGAC GCGAAAGTAG AAGCCGATTC TGAATTAATT
GGCAAAAGTG TCGAGCAAAA CCACTTACGC AATTTACCTG AGCTTTTTTT AATCGAAGTG
GTGCGCAACG GTAAACTTAT CAGTCCTGTT AACCCTGAGT TAGTCATACA ACAAAACGAC
AAACTGATTT TTTCAGGGGA TATACACAAA GTTGATAATT TAAGTCACAT CAAGGGATTA
ACCCTTTTTG CAGAATCAAA TGGTTTGTTA CGTGAAAACC TTACCGAAGT GATTATTTCT
AATCGGGCAC AAATCATTGG TAAAACGCTG AAAAGTGTTG GTTTTAGGGC ATTATTTGAT
GCCGCTGTTG TGGCTATCCG TCGAGACGGT GAAACCCTAT CAGGAAAATT AGGGGAAATT
AAACTCCAAG CAGGTGATTT TTTGCTTTTG GCTACAGGCC CTGACTTCGT CAAGCGCCAA
AACTTAACCA AAAACTTTTT CATTTTGTCC GAGAAAAAAG TCGCCACAAA ACTCCTCGAA
AAACAAGAGT GGATAACCTT AGGCGGTTTT CTAGTCACTA TCGCCCTTGC TGCCGCATCC
CTCATTTCAC TTGCCACAGG TTTAGTGTTT TTCCTAGCGA TATTGGTAGC CACTGGCGTT
ACATCCACCA ACGAAGTTAA ACGTCACCTA CCGTTAGAGC TCATTGTCGT GATTGTCGGC
GCCCTTAGCC TGGCTAACGC GTTAGAAAGT GCAGGAGTGA TAACCACTCT CACACATTAT
TTAGAGCCCT TCATGGCAAG CTCCAGTCCA TTTGTGGCAT TGGTAGTGGT GTATTTAGCA
ACCTTGTTGT TAACAGAGGT CGTTACCAAT AACGCTGCTG CCGCACTGAT GTTCCCCTTT
GCTTATGGGT TGGTAGAGAG TTTAGGCGTA CCTTTGATGC CGTTTGCCTT AGCGGTCGCT
TTTGCCGCCA GCGCTAGCTT TATATCGCCC TATGGGTATC AAACCAATTT ACTGGTTTTT
AGTGCCAGTA ATTATAAGAT GAAACACTTT GTGAAATTTG GTTTGCCTAT TTCAGTTTGT
TACTCGAGCA TCGTGCTCAT CCTACTGAAG TACACATATG ACTTTTAA
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| Protein sequence | MDINQLLVLA IFTGTLAALI LTNKRPSSIF AGTLLALILS QQLSLSNIIT NFTNQGLITL
ILLLIVSTAV DKTSLVKRLG RTLIVASFKR SYWRLFGLTF ASSALLNNTA VVASLIGPTK
QNQYHPASKL LIPLSYAAIL GGTVTLIGTS TNLIVDSFMR EHGHAGFNFW DFTLYGLVAG
LSCGVLMFLL TPLLPVIENK NRKYNSYFID AKVEADSELI GKSVEQNHLR NLPELFLIEV
VRNGKLISPV NPELVIQQND KLIFSGDIHK VDNLSHIKGL TLFAESNGLL RENLTEVIIS
NRAQIIGKTL KSVGFRALFD AAVVAIRRDG ETLSGKLGEI KLQAGDFLLL ATGPDFVKRQ
NLTKNFFILS EKKVATKLLE KQEWITLGGF LVTIALAAAS LISLATGLVF FLAILVATGV
TSTNEVKRHL PLELIVVIVG ALSLANALES AGVITTLTHY LEPFMASSSP FVALVVVYLA
TLLLTEVVTN NAAAALMFPF AYGLVESLGV PLMPFALAVA FAASASFISP YGYQTNLLVF
SASNYKMKHF VKFGLPISVC YSSIVLILLK YTYDF
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