| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1372 |
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| Symbol | |
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| ID | 4171869 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1654602 |
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| End bp | 1655483 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638054385 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_660952 |
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| Protein GI | 109897697 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.465511 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCGTG AACATAAAAA GTTTGAACGC TTAATTTTAT TCAGTGAAGT AGCAAAGCAA
TTAAGCTTCA CCCGCGCAGC ACAAGTGCTT TCAATATCCC GTGGGTATTT GTCAGAACAA
ATTCGTAAGC TTGAACAAGA CATGGATAAA CATTTATTTA TTCGCTCTAC ACGTCATGTA
TCGCTCACCG AGGAAGGGGC GCAATTATTG GCTGGCATGA ATCAAATAAA GCGCTCACTA
CTGGCCCTAG AGCGTGAAAT TCGCCACGAC AATGATGCCC TCGAGGGCGA GCTACGCATC
ACTGCACCCA ACCAATTTGC TCAGCGCTAT ATTCTGGATT TATGTGCTGA ATTTCAAGCG
TGCTATCCCG CCATTTCGGT CAGTGTTGAT TGCAGCTACA CCACTTATGA CCTTTCTCAG
AATGATTTTG ATTTAGCCTT TAGAGCGACC AAAGCGCCCC CACAAAACAT GGTTGCTAAG
AAACTATTTA ATTATCGTCA TACCTGTTGT GCCAGTCCTG AGTATTTAGC TAAACACGGC
GAACCCAAGC GCATTGAGGA CTTAGGGGCG CATATTTGCT TATGTCAGTC GCCTAAGACC
CACTGGCAAT TTGCTGAGCA CAAGGTGAAT ATTAATAGCC AGCTAGCGGT TAACGACAAT
TTTATTCTTA AGAAGCATGC CGTGGCTGGA AAGGGTATTA TTTTAGTGCC CGAATATGTT
GTCGAGGAAG AGGTTAGCTC AGGTGAGCTG GTTCCTTTGT TGGGCAGCGC ATTAAGCCCA
GACTTTGCCA TGTATCTTAT TCATCCCCAA TTGATCCATC AATCGGCTAG GTTAAAGGCA
TTTATTGCCT TTACTCGAGA GTACTTTGAT AACAGAGGTT GA
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| Protein sequence | MSREHKKFER LILFSEVAKQ LSFTRAAQVL SISRGYLSEQ IRKLEQDMDK HLFIRSTRHV
SLTEEGAQLL AGMNQIKRSL LALEREIRHD NDALEGELRI TAPNQFAQRY ILDLCAEFQA
CYPAISVSVD CSYTTYDLSQ NDFDLAFRAT KAPPQNMVAK KLFNYRHTCC ASPEYLAKHG
EPKRIEDLGA HICLCQSPKT HWQFAEHKVN INSQLAVNDN FILKKHAVAG KGIILVPEYV
VEEEVSSGEL VPLLGSALSP DFAMYLIHPQ LIHQSARLKA FIAFTREYFD NRG
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