| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1354 |
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| Symbol | |
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| ID | 4171851 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1627867 |
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| End bp | 1628679 |
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| Gene Length | 813 bp |
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| Protein Length | 270 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638054367 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_660934 |
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| Protein GI | 109897679 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.02424 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAAAA CAGTTTTAGT AACAGGCGCA ACAGACGGAA TTGGCTTTGA AACGGCAAAA
ATGTTGTTAT CTGCTGGTCA TACAGTGCTA TTACACGGTC GCAATAATCG TAAGTTGCAA
GATGCACAGG CCGCATTAAC CTCTGCAACA GGCAGTGATA AAACAGAATG TTATTTGGCC
GATTTGTCCG ACGTTAGCCA AGTTATCCAA TTGGCCGATG CAATTAAAGA AAAGCACAAG
GTGCTTGATG CGCTAATTAA TAATGCAGGT GTATTTAAAG TACCATCTGT CATAACGGCT
GATGAACTCG ACGTGCGGTT TGTGGTTAAT ACGATAGCCC CTTATGTACT AACGAAGGCA
TTGCTTCCTA TTCTCGCTAA AAACGCTCGT GTGGTGAATG TGTCTTCGGC AGCTCAAGCG
CCTGTGAGTC TGGCGGCATT AGCGGGCAAT CAATCGATAA GCGACTCGCA AGCCTACGCC
CAAAGTAAAC TTGCGCTAAC CATGTGGTCG CGTCAGTTAG GATTATCGTT CGCGCAGGAA
GGACCAGTGA TTGTTGCAGT AAACCCCAAA TCCCTGCTCG GCAGCAAGAT GGTAAAAGAT
GCCTATGGCA TGGCGGGCAG TGATTTGCGT GTAGGTGCAG ATATTTTATG TCGCGGTGCG
TTATCTGAAG AGTTTTCACA GGCCTCTGGT CAATATTATG ACAATGATAT TGAGCAATTC
GCTCAACCAC ATCGTGACGC CCTAGATGAG CAAAAAACGC AAAAAATAGT GGCCGCCATG
GATGACATTA TTCAGCGTAT TACCTCTAAG TAA
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| Protein sequence | MSKTVLVTGA TDGIGFETAK MLLSAGHTVL LHGRNNRKLQ DAQAALTSAT GSDKTECYLA
DLSDVSQVIQ LADAIKEKHK VLDALINNAG VFKVPSVITA DELDVRFVVN TIAPYVLTKA
LLPILAKNAR VVNVSSAAQA PVSLAALAGN QSISDSQAYA QSKLALTMWS RQLGLSFAQE
GPVIVAVNPK SLLGSKMVKD AYGMAGSDLR VGADILCRGA LSEEFSQASG QYYDNDIEQF
AQPHRDALDE QKTQKIVAAM DDIIQRITSK
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