| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1279 |
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| Symbol | |
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| ID | 4173290 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1535033 |
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| End bp | 1537555 |
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| Gene Length | 2523 bp |
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| Protein Length | 840 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638054286 |
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| Product | type IV pilus assembly PilZ |
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| Protein accession | YP_660859 |
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| Protein GI | 109897604 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCAAG ATCTCGAACA ATATCATGAC ATTATCGAAC AATTAAAACC CATGATACAT
GAGCCAGAGT TTAGTCAAAT TCTGGCTCAG GTTGCCGGTT CGGTGCCCAA GCAAAAGCGC
TTCCTGCTCA AGATGGAACT GAAGCGTTTA GCGCGTCCAT GTACTCGACT AATCGATTTA
CGCGGGCATG TGGACGGAAA ATGTAAGCTT TATGAATACG AGAGCCAGAG GCACTATTTA
GATGACACGG CGATAGAGGT CTTTGAACGT CAGGTGCGCT CATTTGGCGA GTACACGGTT
GGCGTGTATG AAGCGGTATT AAATACCGAA AACAATTACC GCGTAATGCA TAAAAAAGAA
CAACAAGCTT CTTCACAACC AAAGCAACCA GACAATTCAA CCCTTCCGGT TAGCCATGGT
TATTCAGCCC CTATCATGCC TTTTGGCGAA TTCGCCCAAC GGGGTGAAGA GCGCATGAAT
TATTCAATGA GTGTTGAACT GTTCACTGAA AATAACAAAA GCATGTTAGC CACAACGGTT
GACGTATCCC TTAGTGGCTT AAAGCTCAAA ATAAGCAAAG AGCATAGATT TAAAGCGGGT
GACCGTTTAG CCGTTCAGTT CAGAGGGTTA GAACATGAGT ACATGTTGGA CAACCGCCAA
GGTGTGCAAT ATGTCATTGA GTCGATTGAC CGCAATGCAC AAGACCAGCG ATTACACCTG
AAACGCTTAT TCGATACATT AATGCCTAGT TTTGATCGCT TTCTTGAGCG CTTTATTCAT
GGCAACAAGC GCCGCTATAA AGTCAATATG GACAACACAT TTGACGCCAT ACATAAGAAA
ACGTATGAGC AATATTACAT CCCCAATTTC ACCTCCATCC CCGTATATAT TGACTCTACT
GACGGAGTTT TCAAACCACG TTATGCATTA GCAAATGATT GCAATCGGCA AGATATTTTC
TACTGGAATA ACGAAATTAA TGATCTCAAA TTGGGCTACC TTTTTAAAAA TGAGAGAATT
AAACAATGCC TCATGTATCC AAAAGGAAGA CAAGAAACCT ACCTATACGC GTTCCATCAT
ATTAAAAATG AAAAGGTGTA TTTTTACTCC GCATCGCACG AAGAGCTATT AGCAAACCCA
AGCCTACATG AGTTGTTTTT AAGTTACGGG TCACGCAAAG TGAGTTGGCG AGTATATAAG
TTTCAAGTGC AAGAGGTTGA ACCTAAGCAA AGTCACCGAC CTCTCTCCAT TGCCGATAGC
ATCAGCGAAT CAGTCAAGCG TCAGAATCAA CCACCAACCC CACGCTTAAT GTCTCGTTTA
CGCCACTTAA GTCATATTGC ATTACTAACT AATGTGACAG ATGAATCAAA CACACTGTGC
TTTCAAAAAC TGCCACTTAA TCGCGCCAAG CTGCCCAGTT TAAAAGTGTT TGGTCATCCA
AGGAATCGTA GCCCAGAAAA TATCCAAGTC TTTCGATTTA AATATGCAAA TCAGCGCCGA
GAGTCCCGTT TTATGCTGCG CAGCGCTGTA CAGCTCAAAG TGGAAGATAT AATTATTGAA
GGCCACACAG AAGATATATC CACACACGGT ATTAAACTTG AGTTAAAAAC GTTCTTTCAT
AAAGCCACCG ATTGCCAAGT GCAACTGAGT TTTCCGCAAT TGCAAAAAGT TACACGTAAA
TACGATCTGA GTAACCTTTC CTATCAAGTT CGTCATATTT CTAACGAACG AAATGTGCTG
CACTTAAACG TATTAAATGA CGAGAATAGC AGCGCTACTA AAGCTTTTTT TGAAGAGTTG
ATTAAAAATA ATAAAAATAA ACTTAAAGCA TATCGAGATG AAGAAGATAT TCCGGGTATC
GGTGAAGCCT TGCGTAATAT CTATGCAAAT AATGTCCCTA ACGTGGCGTT TTTTATCCGT
AAAGAAGGAA CCAAATTTGT ACCTGATGCC ACAGCGACCT GGGCGAACCA GAATCGATTG
ACCAATTTAC TGAGTTTCCA AGCACCCCCT GGTGAGTTCA ACTTACTGCC TCTGTTTGAA
GGCTTCAATG GCCCGATTGA TTTTGTGCAG CACACACTGA CTCACATTAA GCCCCATCAG
CGTCCCGTTA TGAGTGAGCT ATTTGTGGCA TTTGATCCCA GCAAAAACAG TGCTTCAGAG
GCGATAAAGA GCTGTTACAT AGACCAATTC GCCAACGACG ATCAGCGTCG TCAATTTATT
GCGCAAGCCC TTGAGCAAGG ACAGTTTATT GCGCTAAAAA TATTTTTAGC GCGCACTGGA
CGCCCAGATA TTGACCGCCT GCAATCAGAG ATTAACTACG TAGGTGTTTA TGCCGTTCAC
AGAGCGAAAC AACTAGAAGA AAAACTGTGG AACATAAATG GTGTTGGCGA TATTTTAGAT
ATAACGGATT TGGTGATGAG CCGATACCAA TTCGACACGC AAGCCATTGT GAATAACTAT
GAAAGGCAAC TGCATCACCC GCAAAAAAGC ATAGAGATAG AACAGTTATT AAACGCTGAA
TAG
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| Protein sequence | MNQDLEQYHD IIEQLKPMIH EPEFSQILAQ VAGSVPKQKR FLLKMELKRL ARPCTRLIDL
RGHVDGKCKL YEYESQRHYL DDTAIEVFER QVRSFGEYTV GVYEAVLNTE NNYRVMHKKE
QQASSQPKQP DNSTLPVSHG YSAPIMPFGE FAQRGEERMN YSMSVELFTE NNKSMLATTV
DVSLSGLKLK ISKEHRFKAG DRLAVQFRGL EHEYMLDNRQ GVQYVIESID RNAQDQRLHL
KRLFDTLMPS FDRFLERFIH GNKRRYKVNM DNTFDAIHKK TYEQYYIPNF TSIPVYIDST
DGVFKPRYAL ANDCNRQDIF YWNNEINDLK LGYLFKNERI KQCLMYPKGR QETYLYAFHH
IKNEKVYFYS ASHEELLANP SLHELFLSYG SRKVSWRVYK FQVQEVEPKQ SHRPLSIADS
ISESVKRQNQ PPTPRLMSRL RHLSHIALLT NVTDESNTLC FQKLPLNRAK LPSLKVFGHP
RNRSPENIQV FRFKYANQRR ESRFMLRSAV QLKVEDIIIE GHTEDISTHG IKLELKTFFH
KATDCQVQLS FPQLQKVTRK YDLSNLSYQV RHISNERNVL HLNVLNDENS SATKAFFEEL
IKNNKNKLKA YRDEEDIPGI GEALRNIYAN NVPNVAFFIR KEGTKFVPDA TATWANQNRL
TNLLSFQAPP GEFNLLPLFE GFNGPIDFVQ HTLTHIKPHQ RPVMSELFVA FDPSKNSASE
AIKSCYIDQF ANDDQRRQFI AQALEQGQFI ALKIFLARTG RPDIDRLQSE INYVGVYAVH
RAKQLEEKLW NINGVGDILD ITDLVMSRYQ FDTQAIVNNY ERQLHHPQKS IEIEQLLNAE
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