Gene Patl_1224 details

Gene Information

• Locus tag: Patl_1224
• ID: 4172690
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: -
• Start bp: 1474665
• End bp: 1475345
• Gene Length: 681 bp
• Protein Length: 226 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 638054231
• Product: phage shock protein A, PspA
• Protein accession: YP_660804
• Protein GI: 109897549
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG1842] Phage shock protein A (IM30), suppresses sigma54-dependent transcription

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAGTTT GGAGAAAATT AGTAACTGCC GTTAAAGGTG GTGCCACAGA AGCAGCACAA 
ACAGTGGTAG ACAGCCAAGC AATCCGTATC CTTGAACAAG AGATCCGTGA AGCAAAAGAC 
GAGCTGCGTA AGTCAGATCA TGCACGCACG CAAATTTTGG CTAAGTGCAA ATTGTCTGAG 
CAGAAAGTCG CCAGCTTGCA ATCTTCTATT GAGCAATACG AAGCCCATGC TCGCAAAGCG 
ATAGATTCAG ATCGCCAACT AGCCCTTGAC TGCGCTCAAA AAGTCAGTGA CTTGAAAGCC 
GAACAAGAAG GTGAACAGAA ATACTTAGAT CAGTTTAAGC AATCTGAGAA GCAGTTGGCG 
GGCAATATCA GTCAAGCAAA AGCTAATCTA CGACGTTTAG AGCAGCAGGT CGACATGGTA 
AAGGCCACTG AGTCTGTGCA AAAAGCACAG GTCGCTGTGT CGTCACGTCA CTTGGGTGCG 
AACAGCAAAA TGAAAACCGC CACCGAGTCG TTGCAGCGTA TTCAAGACAA GCAGACATTG 
CGCGATGCAG AGCTACAAGC AGCGCAAGAA CTTGCGACTG AAGAATCAAG CGACGACCTA 
GAGAAACGTT TGGCTCAAGC CGGTATCAAA GGCGGACAAA CCTCTGCTGA TGATGAGTTA 
AGCCGCATTT TAGGCAAATA G 

 

Protein sequence

MSVWRKLVTA VKGGATEAAQ TVVDSQAIRI LEQEIREAKD ELRKSDHART QILAKCKLSE 
QKVASLQSSI EQYEAHARKA IDSDRQLALD CAQKVSDLKA EQEGEQKYLD QFKQSEKQLA 
GNISQAKANL RRLEQQVDMV KATESVQKAQ VAVSSRHLGA NSKMKTATES LQRIQDKQTL 
RDAELQAAQE LATEESSDDL EKRLAQAGIK GGQTSADDEL SRILGK