| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1205 |
|---|
| Symbol | |
|---|
| ID | 4172671 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 1456265 |
|---|
| End bp | 1457104 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638054212 |
|---|
| Product | patatin |
|---|
| Protein accession | YP_660785 |
|---|
| Protein GI | 109897530 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCAA TAGTGCCGAT TTTTTCGGGG GGCGGAACCC GCTTAACAGT GCATATTGGC
GTGTTCGATG CTTTACAGAA GCTCGATATT CAGTTTCAAC ACATGGTGGG GGTTTCTGGC
GGCTCCATCG TAGCAGCTCT TTATTGCTGT GGTGTGCCCT TAGCAGATAT AAAACACTTA
GCCATGACAA CTGACTTCAA AAAGTTCAAA GGCTTTTCAT TACTCAGATT ATTACGCCAA
GGCGGTTTAA GTTCGGGGGA CCAATTTGAG GCGTGGATGG ACAAACACCT TAAAGGTCTA
ACGTTCTCAG ACATAGATAA AGACTTACAC ATTTTAGCGA CCGATGTTAA CGGCGGAGGC
CCGGTGGTAT TTAGCCGTAA AACGAGTCCC GATTTGAAGA TATCGAAGGC GGTGCGCTTT
TCAATGTCCA TCCCACTTTT TTTCAGCTTT CAAGCCTATA AACAGCATGT TCTTGTAGAC
GGTGCTATTT TATCAGAAGA TGCGTTGTAT CAAGATTGGG CAGGTGATGG CTCACCAGTT
ATGTGTTTTA AATTAAAAAG CGAGCATGTG ACAGATCCGA ACTTTAAAAA AAGTTGGCTG
CCATTACGGC AATATGTGAT GATGCTGATT AGGACCTTCA TGACGGCAAT GTCGCGAGAG
TATGTACATG CAGAGTACTG GCGTAATACT ATAATCATCA ATACGGGTAA ATTATCTCCC
GTCGATTTTA ATATTACAGC GATACAAAAA GAGGAGTTGT ACAATATTGG TTATAACACC
GCATTTGAAT TTGTGCCTAA ACGAATGCAG ATTTATACCG ATACACAACT AAGGAACTAG
|
|---|
| Protein sequence | MKSIVPIFSG GGTRLTVHIG VFDALQKLDI QFQHMVGVSG GSIVAALYCC GVPLADIKHL
AMTTDFKKFK GFSLLRLLRQ GGLSSGDQFE AWMDKHLKGL TFSDIDKDLH ILATDVNGGG
PVVFSRKTSP DLKISKAVRF SMSIPLFFSF QAYKQHVLVD GAILSEDALY QDWAGDGSPV
MCFKLKSEHV TDPNFKKSWL PLRQYVMMLI RTFMTAMSRE YVHAEYWRNT IIINTGKLSP
VDFNITAIQK EELYNIGYNT AFEFVPKRMQ IYTDTQLRN
|
|---|
| |