| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1114 |
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| Symbol | |
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| ID | 4172289 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1345397 |
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| End bp | 1346794 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638054120 |
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| Product | dehydrogenase catalytic domain-containing protein |
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| Protein accession | YP_660694 |
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| Protein GI | 109897439 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes |
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| TIGRFAM ID | [TIGR01348] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGCAC CAGTAAAACA TATTTCGCAA GAAGTTCTAG TACCCGATAT TGGCGGCGGC
ACAGACGTTG AAATCATAGA AATATCAGTC GAAGTGGGTT ACAACATTGA GGTAAATGAC
GCGCTGATAA TACTTGAAAC CGACAAGGCA ACGATGGAGG TTCCCTCGCC GATCGCAGGA
ATCATCACGC GTATATTTGT TGCCCAAGGA GACAAAGTCA GTGAAGGAAG TGTTATTCTT
GAAATTGAGG CTGCTCCAGA AGCCCCCATT CAAACTGATA GCGCAGAAGG CAATACCGAA
GCTAGCATCG AGGAAGAATT ACGTTCCGAG GAAGTTGGCA TTGAAGAAGA AGTAAGTGCT
AATAAAGACG ATTCCCCAGG GTCAGTTTCA CCTCGCAGCA ACGAAACCAC CAAGGACGTT
CATTTTCATA CTTCTGCGTC AACTACGAAT GCCATGGGGA TAAGCGCGGT AGATAAAGAT
AGCATCGCAT ACGCCTCCCC TTCAGTGAGG AAACTAGCAC ATCAATTAGA CATCAACCTC
AATAACGTCA CCGGGAGTGG CCCCAAAGGT CGCATTACTA AAGAAGACAC CCACGCCTAT
GTGAAATCGT TAATGCAAGA GGATCGTAAC AGTGGTGATA CACAAATTGC CGCTGGAGGT
CCGCTGAAAG ATATGTTGGC ATGGCCCCAA GTCGATTTTG CTAAGTTTGG TCCCATTCAA
CGCCAACCGA TTTCTCGGAT CCGCAAAATA AGCGCCGCAA ATTTACATCG CAATTGGGTC
AGTATTCCTC ATGTGACTAA TCATGAAGAT GCAGATATAA CTGACCTTGA CGCATTTCGC
GTTGAGCTCA ATCAGCAACA GGAAAAATCA GGGATAAAGG TCACCATGGT TGCCCTTTTG
ATAAAGGTTG TCACCGCTGC CTTGAAAAAA TTCCCTGAAT TTAACGCCAG TCTCGACGGT
GATGACATCA TATTGAAAGA TTATTTTCAT ATTGGCTTTG CAGCTGATAC GCCAAACGGT
CTCGTCGTAC CGGTACTGCG AGATGCCGAT AAGAAAGGGA TTTTACAGGT CGCCAAAGAA
GTGAGTGAAC TGGCGGCAAA AGCCAGAGAC AGTAAGCTAA GCGCTAATGA TATGAGTGGT
GGATGTATCT CTATATCTTC ATTAGGAGGA ATAGGCGGTA CGTATTTCAC CCCTATTATT
AACGCGCCTG AAGTAGCTAT TTTAGGAGTA GCAAAGGCGC GAACTGAACT CAAGTGGAAC
GGCAAAGAAG CGATACCAAG ATTGATCCTT CCCATGAGTC TAAGTTGGGA TCATAGAGCC
TTAGACGGTG CTCAAGCTGG ACGTTTCAAT GCCTATATAG CTTCTCTGCT TGCTGACATC
AGGCGAATAA TGCTCTAA
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| Protein sequence | MNAPVKHISQ EVLVPDIGGG TDVEIIEISV EVGYNIEVND ALIILETDKA TMEVPSPIAG
IITRIFVAQG DKVSEGSVIL EIEAAPEAPI QTDSAEGNTE ASIEEELRSE EVGIEEEVSA
NKDDSPGSVS PRSNETTKDV HFHTSASTTN AMGISAVDKD SIAYASPSVR KLAHQLDINL
NNVTGSGPKG RITKEDTHAY VKSLMQEDRN SGDTQIAAGG PLKDMLAWPQ VDFAKFGPIQ
RQPISRIRKI SAANLHRNWV SIPHVTNHED ADITDLDAFR VELNQQQEKS GIKVTMVALL
IKVVTAALKK FPEFNASLDG DDIILKDYFH IGFAADTPNG LVVPVLRDAD KKGILQVAKE
VSELAAKARD SKLSANDMSG GCISISSLGG IGGTYFTPII NAPEVAILGV AKARTELKWN
GKEAIPRLIL PMSLSWDHRA LDGAQAGRFN AYIASLLADI RRIML
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