| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1023 |
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| Symbol | |
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| ID | 4173302 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1215304 |
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| End bp | 1216086 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638054029 |
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| Product | peptidyl-prolyl cis-trans isomerase, cyclophilin type |
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| Protein accession | YP_660603 |
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| Protein GI | 109897348 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family |
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| TIGRFAM ID | [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAGCCTA AATTAAAACA CACTGTGCTC GTCGCAGGAT TATACTGCTC GGCAGTGAAT
ATAACGCATG CGACGGAAGT GCAAATTCGA ACGGTACTCG GTGATGTAAA CATCAATCTG
TTCGATAACA CAACCCCGCA AACAGTAGAT AACTTCCTGA GCTACGTAAA TTCTGGGGCT
TATGCTAATA ACGTAGTACA CCGTTCAGAG CCCGGGTTCG TTATTCAAGC GGGTGGTTTT
CAATACAATA ACGCACTACC ACTCGATGGC GTACCAACGG GGAGTTCGGT TGCAAATGAG
CCTGAGCTTT CGAACGTGCG CGGCACTATT GCTATGGCCA AATTGAGCGG CAATGCGAAC
AGTGCAACAT CTCAGTGGTT TGTTAATCTT AACAACAACA GCGCAAACCT CGATGTGCAA
AATGGCGGTT TCACCGTTTT TGGTCAAGTC CTAGGTGACG GTATGGAGAT TATCGATGCT
ATCGCCACCC TTAACCGATT TGATTTAGGG GGCGCGGCAA GCGCAGCGCC TTTGCGTGAT
TATACTCAAG CAGATTTGTC AGCAGGGACA GAGGTAACAG ACCAACACTT GGTCATTATC
AGTGATGTAG TGGTGACTGA CTCAGCCAGT GTGACACACT CAGAATTGAG TCCTGTGGCC
AACACATTAA TCAATCAAGA CACAAGCGGC GGAGGAAGTT CAGGTAGCTC TGGCGGCAGT
CTTGGATTTT TAAGTTTGAT AGGCCTAGCA GCACTGCGTT TTGTGCGCAG GTTATCTGCG
TAA
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| Protein sequence | MKPKLKHTVL VAGLYCSAVN ITHATEVQIR TVLGDVNINL FDNTTPQTVD NFLSYVNSGA
YANNVVHRSE PGFVIQAGGF QYNNALPLDG VPTGSSVANE PELSNVRGTI AMAKLSGNAN
SATSQWFVNL NNNSANLDVQ NGGFTVFGQV LGDGMEIIDA IATLNRFDLG GAASAAPLRD
YTQADLSAGT EVTDQHLVII SDVVVTDSAS VTHSELSPVA NTLINQDTSG GGSSGSSGGS
LGFLSLIGLA ALRFVRRLSA
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