| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1014 |
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| Symbol | |
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| ID | 4171990 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1199146 |
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| End bp | 1200135 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638054015 |
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| Product | DNA-directed RNA polymerase subunit alpha |
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| Protein accession | YP_660594 |
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| Protein GI | 109897339 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00016408 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCGGGTT CTGTAACTGA ATTCTTAAAA CCAAGGTTAG TTGAAATTGA TAACGTTTCG
CCTACACGTG CAAAGGTCAC TTTAGAGCCT TTGGAGCGTG GTTTTGGTCA TACATTGGGT
AATGCGTTAC GTCGTATTCT TTTGTCATCT ATGCCAGGTT GTGCAGTGAC TGAAGTTGAG
ATCGACGGTG TATTACACGA GTACAGCACC AAAGAAGGCG TTCAAGAAGA CGTTATCGAA
ATATTGCTTA ACCTTAAAGG TTTGGCGGTA CGTCTTGAAG GCAAAACCGA AGCAACACTA
ACATTAGTGA AGTCCGGTGC GGGCCCAGTA TTAGCTGGAG ACATCCAGCA TGATGGTGAT
GTTGAAATCG TAAACCCAAG TCACGTTCTT TGTACTTTAA CTGGCGAAGC TGAACTCAGC
ATGCGCATTA AAGTAGAAAT GGGCCGTGGG TACGTTCCAG CGTCAACTCG TCGCTCTTCT
GAAGAAGATG ATCGCCCAAT TGGTCGTTTA TTGGTTGATG CTTCATTTAG TCCAGTATCA
CGTATTTCGT ACAACGTTGA ATCTGCGCGT GTTGAACAAC GCACTGATTT AGACAAGTTA
ATTATCGATA TGGAAACCAA TGGCACTATC GATCCCGAAG AAGCGATTCG TCGCTCAGCA
ACTATATTAG CTGAGCAATT AGACGCATTC GTTGAACTTC GTGATATGTC AGAGCCTGTT
GAGAAAGAAG AGAAGCCGGA ATTTGATCCG ATTCTTCTTC GCCCAGTTGA TGATTTAGAA
CTTACAGTAC GTTCAGCTAA CTGCCTTAAA GCAGAAGCGA TACAATATAT TGGTGACCTA
GTACAACGCA CCGAAGTTGA GTTGTTAAAG ACTCCTAACT TAGGTAAAAA ATCTCTTACT
GAGATCAAAG ATGTACTAGC TTCTCGTGGA CTTTCACTAG GTATGCGCTT AGAGAACTGG
CCACCAGAAA GCATCGCAGA AAAAGATTAA
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| Protein sequence | MSGSVTEFLK PRLVEIDNVS PTRAKVTLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE
IDGVLHEYST KEGVQEDVIE ILLNLKGLAV RLEGKTEATL TLVKSGAGPV LAGDIQHDGD
VEIVNPSHVL CTLTGEAELS MRIKVEMGRG YVPASTRRSS EEDDRPIGRL LVDASFSPVS
RISYNVESAR VEQRTDLDKL IIDMETNGTI DPEEAIRRSA TILAEQLDAF VELRDMSEPV
EKEEKPEFDP ILLRPVDDLE LTVRSANCLK AEAIQYIGDL VQRTEVELLK TPNLGKKSLT
EIKDVLASRG LSLGMRLENW PPESIAEKD
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