Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_0933 |
Symbol | |
ID | 4172140 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 1111842 |
End bp | 1113746 |
Gene Length | 1905 bp |
Protein Length | 634 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638053934 |
Product | TRAP transporter, 4TM/12TM fusion protein |
Protein accession | YP_660513 |
Protein GI | 109897258 |
COG category | [R] General function prediction only |
COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGATC AAACAAGCTT CAGTAATTGG GTTACAAATA AAGTTGTGTT AATTGCTGCA TTGGCAGCAA TAGCATTATC TATTTTTCAA ATTTGGCAGG GTATAACCTC AGAGTTATCC GCGCCTGTTT TTAGACCTAT ACATTTAAGT TGGGTCTTAA TCCTAGTATT CTTAACTACC CCCCTAATTA AACCTCTACA GTCCCCATTT CTCTATCTAT CTGCTCGTTG TATTGACATA GTTTTTATCA TTGCCACTGC GTGGGCTTCA TATCACATTG TTTCCTTTGA TTACGATGAT ATTTCTTTTC TACTCGATGG GTTAACGACG CTGGATCAAT TGTCCGGTTT AATTATTATC GTGTTACTGC TCGAAGCAAC ACGCCGCACA GTTGGTGTGG TAATGGTATT AATTGCGGCA CTATTTTTAC TCTATGCAAT TTTTGGCGAC GCATTGCCTG CAACCGTCGC CAGTAGAGGG TTTTCAGTGG AAGAAATTGT CCGATTCCAT GTATTTTCAA CCAATGGTAT CTACGGTGCT CCACTTGCTA TTGCAGCAGG TGTCGTATTT ATTTTTGTGT TATTTGGGGC GTTTTTGCAG GTTACCGGTG CTGGTAAGTT CTTTATAGAC GCCTCTTTTT CAATTGCCGG AAAGTACAGA GGCGGACCAG CTAAAGCCAG CGTTATTGCA TCTGCAGCGC TAGGTTCAAT CTCCGGATCC GCTATAGCCA ATACCGTGAC AACTGGCGCA TTAACAATCC CTATGATGAA AAAGCTTGGT TATAAACCAG AGCAAGCTGC CGGTATTGAA GCCGCTGCAT CAACAGGTGG GCAGATCATG CCGCCTGTAA TGGGCGCTGG TGCTTTTGTG ATGGCACAAT TTACCGGGAT TCCTTACAGT GAGATATTAT TAGTCTCTAT TGCACCAGCC ATATTATATT TTACCTGCAC CTTGCTATAT GTGCACTTGA TGGCGTGTAA GTTAGGTTTA CAAGGTATGA AGGTAACTGA AAAAATTTCC GTAGTGCTAA AAGATGGATG GCACTTTCTA GTACCATTGA TTTTAATAAC CACCCTACTG TTAATGAGTT ATTCGCCCAT ATTGGTAGGT ATTTCTGGTT GTGTAGCGAT ATTAGTTGCG GCAATGTGCA GAAAACATAG CCGAATTAGC ATCGCGGTAT TTTTTGCTGG TATGAAAGAA GGGGCATTAC TTGCGCTTCC TATTTCAGTA GCATGTGGAA CCGCGGGCAT TGTGGTGGGT GTAGTTGGTC AAACAGGCAT AGGTTTACAA TTTACACAGT TTTTAATGGC GCTTTCAGGC GGGTATTTGT GGTCGGTACT AGGGCTTATC GCTATCGCGG CCATTATTCT GGGCATGGGC TTACCTGTAA CTGCTGCTTA TATTGTGTTG TCCATCATGG CTGTTCCAAG CTTAACGGAG TTAGGAGTAG GCTTGCTGGC TGCGCACATG GTTGTATTTT GGTTGTCGCA AACCTCGAAC GTCACCCCAC CTATTGCTTT AGCTGCTTTT GCCGCGGCAG GTATTGCCAA CACATCACCA ATGAAGTCTG CAGTCCAAGC TTTTAAACTC GCCCAAGGTT TTTTTATTAT ACCGATCATG ATGGCATTTT CTGGGTTGAT CTGGATGGAG GGTCAAAATA TTGATTTTGT AATGGCGATT ATTCTAACGA TTGGTTTGAT CATTTCTTTT GCAGGAGCCA TTGAAGGAAG GTTAGCGACA ATGTTACCAA TAGCTGCCAG GGGCTTATTA TTGATAGCGG GGTTAACGAT GTTGGCCCCT AACCTTTATA TCAATATTTT GGGTATAGCC ATTATCGTAA TCACGATGCT AACCAACTAT CGCGCCTCTA GGTTGGAAGC GTTACAACCT TCCCCTCTAA ACTAA
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Protein sequence | MTDQTSFSNW VTNKVVLIAA LAAIALSIFQ IWQGITSELS APVFRPIHLS WVLILVFLTT PLIKPLQSPF LYLSARCIDI VFIIATAWAS YHIVSFDYDD ISFLLDGLTT LDQLSGLIII VLLLEATRRT VGVVMVLIAA LFLLYAIFGD ALPATVASRG FSVEEIVRFH VFSTNGIYGA PLAIAAGVVF IFVLFGAFLQ VTGAGKFFID ASFSIAGKYR GGPAKASVIA SAALGSISGS AIANTVTTGA LTIPMMKKLG YKPEQAAGIE AAASTGGQIM PPVMGAGAFV MAQFTGIPYS EILLVSIAPA ILYFTCTLLY VHLMACKLGL QGMKVTEKIS VVLKDGWHFL VPLILITTLL LMSYSPILVG ISGCVAILVA AMCRKHSRIS IAVFFAGMKE GALLALPISV ACGTAGIVVG VVGQTGIGLQ FTQFLMALSG GYLWSVLGLI AIAAIILGMG LPVTAAYIVL SIMAVPSLTE LGVGLLAAHM VVFWLSQTSN VTPPIALAAF AAAGIANTSP MKSAVQAFKL AQGFFIIPIM MAFSGLIWME GQNIDFVMAI ILTIGLIISF AGAIEGRLAT MLPIAARGLL LIAGLTMLAP NLYINILGIA IIVITMLTNY RASRLEALQP SPLN
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